Alternatives and similar repositories for zarrcade:

Users that are interested in zarrcade are comparing it to the libraries listed below

• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆25Updated 3 weeks ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated 2 weeks ago
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆23Updated this week
• ome / omero-cli-zarr
  ☆17Updated last week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated last month
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆16Updated 5 months ago
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆14Updated this week
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆22Updated last month
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆56Updated 3 weeks ago
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆34Updated this week
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆17Updated last week
• NL-BioImaging / biomero
  BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
  ☆16Updated last month
• fractal-analytics-platform / ngio
  NGIO is a Python library to streamline OME-Zarr image analysis workflows.
  ☆12Updated last week
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆35Updated this week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 9 months ago
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆30Updated last year
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated last year
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated 3 months ago
• rosalindfranklininstitute / RedLionfish
  ☆29Updated last year
• ome / omero-py
  Python project containing Ice remoting code for OMERO
  ☆23Updated 3 weeks ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆42Updated 2 months ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆27Updated 11 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated last week
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 2 weeks ago
• andy-sweet / napari-metadata
  A napari plugin to view and edit metadata
  ☆10Updated last year
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆36Updated this week
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆28Updated last year
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated 3 weeks ago