Create web-based OME-Zarr galleries
☆31Jul 7, 2026Updated 3 months ago
Alternatives and similar repositories for zarrcade
Users that are interested in zarrcade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- S3 Proxy Service☆13Sep 17, 2026Updated last month
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Updated this week
- Modern Bio-Formats wrapper with clean lazy Python API☆24Jun 25, 2026Updated 4 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆22Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Tiled processing of arbitrarily large images — any image, any function.☆18Oct 22, 2026Updated last week
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆29Oct 21, 2026Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆56Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- Browse, share, and publish OME-Zarr data☆30Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A BioIO reader plugin for reading Zarr files in the OME format.☆14Sep 8, 2026Updated last month
- NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurat…☆13Oct 20, 2026Updated last week
- Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format☆13Sep 18, 2026Updated last month
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Fast 4-coloring of instance segmentation label images (N-color relabeling) for Python, C++ core☆16Sep 28, 2026Updated last month
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆40Oct 10, 2026Updated 2 weeks ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 7 months ago
- An OpenSeadragon tile source for the OME-Zarr bioimage file format☆13Sep 26, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Oct 17, 2026Updated last week
- load ome-zarr files in xarray☆11Oct 19, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆262Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 5 months ago
- AnnData for the browser☆14Oct 22, 2026Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Oct 12, 2026Updated 2 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week
- ☆14Updated this week
- A fully scalable robust image feature extraction library.☆30Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆74Updated this week
- A minimal Zarr image viewer based on Viv.☆201Jun 22, 2026Updated 4 months ago
- Feature extraction and linking of multiplexing data.☆13Oct 13, 2026Updated 2 weeks ago
- Block-wise operations for large nD volumes☆45Updated this week
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆36Feb 1, 2026Updated 8 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 4 months ago