JaneliaSciComp / zarrcadeLinks
Create web-based OME-Zarr galleries
☆19Updated 3 months ago
Alternatives and similar repositories for zarrcade
Users that are interested in zarrcade are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated last month
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- ☆17Updated 2 weeks ago
- Pydantic models for OME-NGFF☆24Updated last week
- GIve easy, high-level access to ome-zarr fileset☆17Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆52Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆37Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 5 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆19Updated 5 months ago
- Command-line client for Fractal☆46Updated last week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆14Updated this week
- ☆14Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆41Updated 2 weeks ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆21Updated 3 weeks ago
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- ☆37Updated 3 weeks ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Updated 2 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated this week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆19Updated 2 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- serve Zarr datasets via HTTP☆31Updated 2 years ago
- A template repo used to make new napari plugins☆26Updated 3 weeks ago