fideus-labs / ngff-zarrLinks
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆50Updated this week
Alternatives and similar repositories for ngff-zarr
Users that are interested in ngff-zarr are comparing it to the libraries listed below
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆34Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆24Updated this week
- Command-line client for Fractal☆46Updated last week
- Browse your OMERO database from within napari.☆39Updated last week
- native Python dataclasses for the OME data model☆61Updated last week
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- Pydantic models for OME-NGFF☆24Updated 3 weeks ago
- Main tasks for the Fractal analytics platform☆20Updated last week
- ☆51Updated this week
- GIve easy, high-level access to ome-zarr fileset☆21Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated last week
- ☆18Updated 2 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last week
- ☆32Updated 5 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆17Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆80Updated last month
- GPU-accelerated Image Processing library for Python☆51Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆140Updated last week
- StarDist plugin for napari☆39Updated last year
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 2 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago