A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆67Mar 25, 2026Updated this week
Alternatives and similar repositories for ngff-zarr
Users that are interested in ngff-zarr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆37Updated this week
- ☆19Mar 16, 2026Updated last week
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆63Mar 21, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆51Dec 9, 2025Updated 3 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆50Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 6 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆108Updated this week
- A dataset for loading zarr files to be used in machine learning training pipelines☆35Jan 5, 2026Updated 2 months ago
- A minimal Zarr image viewer based on Viv.☆188Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆227Mar 19, 2026Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Mar 16, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated 2 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆118Mar 19, 2026Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated 3 weeks ago
- widget for PSF simulation with aberrations☆25Oct 31, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Performance benchmarks of Zarr V3 implementations☆19Feb 8, 2026Updated last month
- A fully scalable robust image feature extraction library.☆28Mar 18, 2026Updated last week
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆46Mar 17, 2026Updated last week
- ☆25May 16, 2023Updated 2 years ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 6 months ago
- GPU-based 3D non-rigid volumetric registration☆47Aug 26, 2025Updated 7 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆23Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A Board Game to teach co-localization analysis☆14Nov 1, 2024Updated last year
- A napari plugin to view and edit layer metadata☆13Updated this week
- ☆41Mar 22, 2026Updated last week
- Light microscopy simulation in python.☆43Mar 10, 2026Updated 2 weeks ago
- Paint segmentations directly to on-disk/remote zarr arrays☆16Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Mar 21, 2026Updated last week
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 6 months ago