fideus-labs / ngff-zarrView external linksLinks
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
☆63Feb 9, 2026Updated last week
Alternatives and similar repositories for ngff-zarr
Users that are interested in ngff-zarr are comparing it to the libraries listed below
Sorting:
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- ☆18Feb 5, 2026Updated last week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 5 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆61Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆224Updated this week
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Jan 5, 2026Updated last month
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆105Updated this week
- ☆50Dec 9, 2025Updated 2 months ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Dec 22, 2025Updated last month
- A minimal Zarr image viewer based on Viv.☆181Feb 1, 2026Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated last month
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆153Feb 5, 2026Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 2 months ago
- ☆41Updated this week
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated 11 months ago
- A fully scalable robust image feature extraction library.☆28Updated this week
- Main tasks for the Fractal analytics platform☆23Feb 5, 2026Updated last week
- Streaming directly to Zarr on the file system or S3☆27Updated this week
- widget for PSF simulation with aberrations☆25Oct 31, 2023Updated 2 years ago
- ☆25May 16, 2023Updated 2 years ago
- Command-line client for Fractal☆48Feb 9, 2026Updated last week
- Performance benchmarks of Zarr V3 implementations☆17Feb 8, 2026Updated last week
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Mar 14, 2025Updated 11 months ago
- GPU-accelerated Image Processing library for Python☆53Feb 2, 2026Updated last week
- Light microscopy simulation in python.☆43Feb 2, 2026Updated last week
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated last year
- A web-based, time-series visualizer for tracked segmented data.☆13Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago