ngio is a Python library to streamline OME-Zarr image analysis workflows.
☆52Oct 6, 2026Updated this week
Alternatives and similar repositories for ngio
Users that are interested in ngio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Sep 22, 2026Updated 2 weeks ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆260Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago
- ☆22Updated this week
- Browse, share, and publish OME-Zarr data☆30Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆40Oct 1, 2026Updated last week
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- ☆24Jul 22, 2026Updated 2 months ago
- Scientific image analysis resources and software tools.☆49Oct 3, 2026Updated last week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Sep 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fractal backend☆21Oct 1, 2026Updated last week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆56Updated this week
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 9 months ago
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- Main tasks for the Fractal analytics platform☆28Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- ☆45Sep 28, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆29Sep 24, 2026Updated 2 weeks ago
- Streaming directly to Zarr on the file system or S3☆35Updated this week
- GPU-accelerated Image Processing library for Python☆65Oct 1, 2026Updated last week
- ☆19Updated this week
- OMERO.server production docker image☆17Aug 5, 2026Updated 2 months ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 3 months ago