BioVisionCenter / ngioLinks
Ngio is a Python library to streamline OME-Zarr image analysis workflows.
☆37Updated last week
Alternatives and similar repositories for ngio
Users that are interested in ngio are comparing it to the libraries listed below
Sorting:
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆56Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- Main tasks for the Fractal analytics platform☆22Updated 3 weeks ago
- Browse your OMERO database from within napari.☆40Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- Command-line client for Fractal☆47Updated this week
- dask empowered fast4dreg☆15Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- GIve easy, high-level access to ome-zarr fileset☆22Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Updated 2 months ago
- ☆15Updated last month
- native Python dataclasses for the OME data model☆65Updated this week
- A napari plugin to view and edit metadata☆12Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated 3 weeks ago
- A template repo used to make new napari plugins☆30Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆18Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated 3 weeks ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- ☆14Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- ☆18Updated last month
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last month
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated 3 weeks ago
- A 3D interactivity toolbox for napari☆37Updated 6 months ago