BioVisionCenter / ngioLinks
Ngio is a Python library to streamline OME-Zarr image analysis workflows.
☆27Updated last week
Alternatives and similar repositories for ngio
Users that are interested in ngio are comparing it to the libraries listed below
Sorting:
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆40Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆54Updated this week
- Browse your OMERO database from within napari.☆39Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆35Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- ☆15Updated 3 weeks ago
- Command-line client for Fractal☆47Updated this week
- Main tasks for the Fractal analytics platform☆22Updated last week
- native Python dataclasses for the OME data model☆64Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- dask empowered fast4dreg☆15Updated 11 months ago
- A napari plugin to view and edit metadata☆12Updated 2 years ago
- ☆51Updated 6 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆17Updated 6 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- A template repo used to make new napari plugins☆28Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 3 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 4 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- ☆36Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated 3 weeks ago
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last month
- A 3D interactivity toolbox for napari☆37Updated 4 months ago