haesleinhuepf / napari-workflow-optimizerLinks
Optimize image processing workflows in napari
☆17Updated last month
Alternatives and similar repositories for napari-workflow-optimizer
Users that are interested in napari-workflow-optimizer are comparing it to the libraries listed below
Sorting:
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ☆23Updated 3 weeks ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last month
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- ☆25Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 months ago
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- A 3D interactivity toolbox for napari☆34Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- ☆18Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ☆16Updated 2 years ago
- Napari gaming☆17Updated 3 years ago
- dask empowered fast4dreg☆11Updated 6 months ago
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Process images using SimpleITK in napari☆21Updated last month
- 1d plotting in napari-based canvas.☆26Updated this week