Optimize image processing workflows in napari
☆17May 1, 2025Updated 10 months ago
Alternatives and similar repositories for napari-workflow-optimizer
Users that are interested in napari-workflow-optimizer are comparing it to the libraries listed below
Sorting:
- ☆13Aug 16, 2024Updated last year
- Napari plugin for vollseg☆14Jul 16, 2025Updated 7 months ago
- ☆15Jul 29, 2022Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆90Feb 23, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- ☆23Jun 27, 2025Updated 8 months ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Feb 14, 2026Updated 3 weeks ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆25May 16, 2023Updated 2 years ago
- Web Image Processing Pipeline (WIPP)☆26Dec 19, 2025Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 3 months ago
- ☆33May 2, 2025Updated 10 months ago
- Command-line client for Fractal☆48Feb 25, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 5 months ago
- ☆20May 1, 2025Updated 10 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 3 weeks ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated 11 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Main tasks for the Fractal analytics platform☆23Feb 27, 2026Updated last week
- A napari plugin to view and edit layer metadata☆13Updated this week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆13Jan 22, 2026Updated last month
- Template for creating a new python repository☆13Sep 28, 2025Updated 5 months ago
- Linking napari layers with Matplotlib plots☆43Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆154Jan 11, 2026Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- Framework for image and flow cytometry analysis☆32Jan 3, 2026Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- Teaching materials for improving research software writing abilities.☆13Dec 1, 2025Updated 3 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 7 months ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated 2 weeks ago