clij / clij2Links
GPU-accelerated image processing for everyone
☆54Updated last year
Alternatives and similar repositories for clij2
Users that are interested in clij2 are comparing it to the libraries listed below
Sorting:
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆147Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 3 weeks ago
- ☆32Updated last year
- ☆37Updated 3 weeks ago
- Lectures for a napari training course☆50Updated last year
- Cookiecutter for napari plugins☆69Updated 9 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆67Updated 2 weeks ago
- Process images using SimpleITK in napari☆21Updated 3 months ago
- StarDist plugin for napari☆40Updated last year
- ☆49Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- Generate markdown notebooks from ImageJ Macro☆25Updated 4 years ago
- Accurate and efficient spot detection for microscopy data☆95Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Command-line client for Fractal☆46Updated this week
- ☆51Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago