clij / clij2Links
GPU-accelerated image processing for everyone
☆55Updated last year
Alternatives and similar repositories for clij2
Users that are interested in clij2 are comparing it to the libraries listed below
Sorting:
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- ☆41Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- ☆36Updated last year
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- ☆51Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Command-line client for Fractal☆48Updated this week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Cookiecutter for napari plugins☆71Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 8 months ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆159Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- StarDist plugin for napari☆38Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago
- ☆20Updated 3 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago