clij / clij2Links
GPU-accelerated image processing for everyone
☆55Updated last year
Alternatives and similar repositories for clij2
Users that are interested in clij2 are comparing it to the libraries listed below
Sorting:
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 8 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆152Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A napari plugin for clustering objects according to their properties.☆89Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- ☆36Updated last year
- ☆41Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆157Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- StarDist plugin for napari☆38Updated last year
- Cookiecutter for napari plugins☆71Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 2 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 7 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 months ago
- ☆51Updated 8 months ago
- High quality visualization for volumetric image data☆54Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆87Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆51Updated last month