A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
☆30May 1, 2025Updated 10 months ago
Alternatives and similar repositories for napari-segment-blobs-and-things-with-membranes
Users that are interested in napari-segment-blobs-and-things-with-membranes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52May 1, 2025Updated 10 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- ☆38Mar 9, 2026Updated 3 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆17Nov 10, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆33May 2, 2025Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆90Mar 23, 2026Updated last week
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Command-line client for Fractal☆49Updated this week
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 8 months ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Cell tracking and segmentation software☆174Mar 20, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- ☆25May 16, 2023Updated 2 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated 8 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆56May 1, 2025Updated 10 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆61Updated this week
- Optimize image processing workflows in napari☆17May 1, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the …☆30Mar 12, 2026Updated 2 weeks ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- A fully scalable robust image feature extraction library.☆28Updated this week
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Gamified image segmentation quality estimation☆19May 1, 2025Updated 10 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆154Jan 11, 2026Updated 2 months ago
- ☆112Mar 19, 2026Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week