Alternatives and similar repositories for napari-ome-zarr:

Users that are interested in napari-ome-zarr are comparing it to the libraries listed below

• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆20Updated 2 weeks ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆16Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆32Updated last month
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆22Updated this week
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 3 years ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated last week
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last month
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆34Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆61Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 4 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆16Updated last week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• NL-BioImaging / biomero
  BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
  ☆14Updated this week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• ome / omero-cli-zarr
  ☆16Updated 3 weeks ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆38Updated 2 months ago
• multiview-stitcher / napari-stitcher
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆15Updated last month
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆19Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆40Updated 3 months ago
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆27Updated 2 weeks ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆35Updated 2 weeks ago
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆12Updated 3 weeks ago
• rosalindfranklininstitute / RedLionfish
  ☆29Updated 10 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆50Updated 3 months ago
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆13Updated 3 weeks ago
• haesleinhuepf / devbio-napari
  ☆45Updated 3 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated 8 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆13Updated 9 months ago