A napari plugin for zarr backed OME-NGFF images
☆56Aug 31, 2026Updated 3 weeks ago
Alternatives and similar repositories for napari-ome-zarr
Users that are interested in napari-ome-zarr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Sep 21, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 3 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- ☆22Aug 31, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Aug 27, 2026Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 5 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Updated this week
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆26Feb 14, 2026Updated 7 months ago
- Main tasks for the Fractal analytics platform☆28Sep 2, 2026Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Sep 18, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆171Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Sep 8, 2026Updated 2 weeks ago
- ☆34May 2, 2025Updated last year
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- A template repo used to make new napari plugins☆42Sep 1, 2026Updated 3 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Updated this week
- ☆24Jul 22, 2026Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference implementation of the Graph Exchange File Format☆42Updated this week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆134Sep 6, 2026Updated 3 weeks ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 6 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Sep 21, 2026Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Sep 15, 2026Updated last week
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated last year
- A minimal Zarr image viewer based on Viv.☆199Jun 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 6 months ago
- ☆27Sep 11, 2026Updated 2 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 10 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Updated this week
- Source materials for a textbook on AI in Microscopy☆16Sep 21, 2026Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆49May 1, 2025Updated last year
- Template for creating a new python repository☆13Updated this week