glencoesoftware / raw2ometiffLinks
Raw format to OME-TIFF converter
☆56Updated last week
Alternatives and similar repositories for raw2ometiff
Users that are interested in raw2ometiff are comparing it to the libraries listed below
Sorting:
- Bio-Formats image file format to raw format converter☆102Updated 2 months ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- ☆91Updated last month
- Command-line client for Fractal☆47Updated this week
- QuPath extension for Cellsparse☆19Updated 7 months ago
- ☆35Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated this week
- Interactive visualization of spatial omics data☆73Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆156Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆16Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆33Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆17Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Multiple-choice microscopy pipeline☆143Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- The official QuPath extension for InstanSeg☆28Updated last month
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 3 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated 2 weeks ago
- QuPath extension to interactively align images☆26Updated 3 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆108Updated last week