Alternatives and similar repositories for raw2ometiff

Users that are interested in raw2ometiff are comparing it to the libraries listed below

• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆97Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated last week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 3 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 4 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• KerenLab / CellSighter
  ☆34Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated last month
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆66Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 11 months ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated this week
• peng-lab / BaSiCPy
  ☆87Updated 5 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆30Updated last year
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 9 months ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆25Updated 2 weeks ago
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆25Updated last month
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 11 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 2 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆78Updated last month
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• BIOP / ijp-kheops
  ☆20Updated last month
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆99Updated last month
• AllenCell / aics-ml-segmentation
  ☆32Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆96Updated 5 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆27Updated 4 months ago