Alternatives and similar repositories for raw2ometiff

Users that are interested in raw2ometiff are comparing it to the libraries listed below

• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆103Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 2 months ago
• KerenLab / CellSighter
  ☆37Updated 2 years ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆35Updated 2 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 3 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 2 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆100Updated last year
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆48Updated this week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 9 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆75Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆35Updated 5 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated this week
• peng-lab / BaSiCPy
  ☆92Updated 3 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆117Updated last week
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Updated last year
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆13Updated 6 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆26Updated 6 months ago
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆17Updated last year
• qupath / qubalab
  Lab for quantitative bioimage analysis experiments in Python
  ☆19Updated last week
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆22Updated 4 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆145Updated 2 weeks ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆36Updated last week
• BIOP / ijp-kheops
  ☆20Updated 3 weeks ago
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆63Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year