Raw format to OME-TIFF converter
☆56Apr 8, 2026Updated this week
Alternatives and similar repositories for raw2ometiff
Users that are interested in raw2ometiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bio-Formats image file format to raw format converter☆104Apr 3, 2026Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated last month
- ☆19Mar 16, 2026Updated 3 weeks ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 8 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago
- ☆21Apr 1, 2026Updated last week
- iSyntax to raw format converter☆24Nov 26, 2025Updated 4 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated 11 months ago
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last week
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆340Apr 7, 2026Updated last week
- ☆15Updated this week
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 6 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A minimal Zarr image viewer based on Viv.☆189Apr 6, 2026Updated last week
- Python project containing Ice remoting code for OMERO☆28Mar 25, 2026Updated 2 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 4 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Apr 3, 2026Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 4 months ago
- Deep learning based spot detection for FISH images.☆34Jan 7, 2026Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 5 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆65Apr 4, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆46Apr 6, 2026Updated last week
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 2 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆68Jul 2, 2025Updated 9 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆230Updated this week
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Nov 3, 2025Updated 5 months ago
- Django-based OMERO.web client☆23Mar 16, 2026Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated last year
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆244Apr 7, 2026Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 5 years ago
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year