Alternatives and similar repositories for multiscale-spatial-image

Users that are interested in multiscale-spatial-image are comparing it to the libraries listed below

• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆35Updated last week
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 3 months ago
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆54Updated this week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 2 months ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆27Updated last week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆40Updated 2 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆64Updated last week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆40Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 4 months ago
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆24Updated 8 months ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆34Updated last week
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated last week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆85Updated last week
• morphometrics / morphometrics
  ☆22Updated 2 years ago
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆52Updated this week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated last week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 8 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆142Updated this week
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆17Updated 4 months ago
• PolusAI / nyxus
  A fully scalable robust image feature extraction library.
  ☆26Updated last week
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆21Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆19Updated 3 weeks ago
• fractal-analytics-platform / fractal-tasks-core
  Main tasks for the Fractal analytics platform
  ☆22Updated last week
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 2 weeks ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• mobie / mobie-viewer-fiji
  ☆39Updated this week
• ome / omero-ms-zarr
  Experimental micro-service for implementing the Zarr spec over HTTP
  ☆18Updated this week