spatial-image / multiscale-spatial-imageLinks
Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
☆54Updated 3 weeks ago
Alternatives and similar repositories for multiscale-spatial-image
Users that are interested in multiscale-spatial-image are comparing it to the libraries listed below
Sorting:
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 4 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆32Updated this week
- native Python dataclasses for the OME data model☆64Updated last week
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last week
- Command-line client for Fractal☆47Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆44Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- Main tasks for the Fractal analytics platform☆22Updated last week
- High quality visualization for volumetric image data☆53Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated 2 months ago
- Reference implementation of the Graph Exchange File Format☆31Updated last week
- GPU-accelerated Image Processing library for Python☆52Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- Browse your OMERO database from within napari.☆39Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- A 3D interactivity toolbox for napari☆37Updated 5 months ago
- ☆22Updated 2 years ago
- ☆18Updated 2 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 4 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆33Updated last week
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆87Updated this week