Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
☆55Nov 13, 2025Updated 6 months ago
Alternatives and similar repositories for multiscale-spatial-image
Users that are interested in multiscale-spatial-image are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 10 months ago
- An introduction to OME-Zarr for big bioimaging data☆27Jun 2, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆51May 28, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 8 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆242Jun 1, 2026Updated last week
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated 3 weeks ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 3 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆49May 28, 2026Updated last week
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆165Updated this week
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15May 28, 2026Updated last week
- Interactive visualization of spatial omics data☆86May 15, 2026Updated 3 weeks ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- A fully scalable robust image feature extraction library.☆28Updated this week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆118Jun 2, 2026Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 6 months ago
- A minimal Zarr image viewer based on Viv.☆195May 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jun 1, 2026Updated last week
- GPU-accelerated Image Processing library for Python☆60Updated this week
- Command-line client for Fractal☆49Updated this week
- Linking napari layers with Matplotlib plots☆43Jun 2, 2026Updated last week
- ☆33Updated this week
- GPU-based 3D non-rigid volumetric registration☆49Aug 26, 2025Updated 9 months ago
- Python API and Jupyter widget for Vitessce☆67Updated this week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- A napari plugin to view and edit layer metadata☆13Jun 1, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22May 22, 2026Updated 2 weeks ago
- ☆15Jul 29, 2022Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated 2 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆91Jun 1, 2026Updated last week
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 8 months ago
- native Python dataclasses for the OME data model☆66Apr 2, 2026Updated 2 months ago