ITK IO for images stored in OME-Zarr format.
☆11Sep 4, 2025Updated 6 months ago
Alternatives and similar repositories for ITKIOOMEZarrNGFF
Users that are interested in ITKIOOMEZarrNGFF are comparing it to the libraries listed below
Sorting:
- ☆18Dec 9, 2025Updated 3 months ago
- An introduction to OME-Zarr for big bioimaging data☆24Mar 13, 2026Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Mar 9, 2026Updated last week
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week
- Implementation of the Zarr core protocol (version 2 and 3) based on xtensor.☆47May 11, 2022Updated 3 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 4 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated 2 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆15Feb 27, 2026Updated 3 weeks ago
- Automatically annotate cell types, consistently across samples.☆19Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 6 months ago
- Prostate gland segmentation with deep Convolutional Neural Networks☆10May 29, 2017Updated 8 years ago
- An ITK ImageIO module for the OpenSlide library.☆12Nov 11, 2025Updated 4 months ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- SCIFIO ImageIO plugin for ITK☆16Nov 12, 2025Updated 4 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆37Updated this week
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆130Jan 9, 2026Updated 2 months ago
- SliceTracker is a 3D Slicer extension to support the workflow of MR-guided prostate biopsies.☆13Oct 14, 2020Updated 5 years ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Github Action to set up a Developer Command Prompt for Microsoft Visual C++☆25Mar 14, 2026Updated last week
- Zarr filesystem backend for N5☆19Updated this week
- ☆41Jul 24, 2024Updated last year
- ☆21Updated this week
- Streaming directly to Zarr on the file system or S3☆29Updated this week
- ☆13Dec 7, 2021Updated 4 years ago
- ☆34Oct 10, 2025Updated 5 months ago
- The Bioconductor Build System☆12Mar 9, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆226Mar 11, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated last month
- A simple native R reader for Zarr Arrays☆48Updated this week
- A performant scientific image visualization system.☆36Updated this week
- Deployment infrastructure for the Image Data Resource☆14Feb 21, 2026Updated last month
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 8 months ago
- A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data☆12Feb 1, 2024Updated 2 years ago
- A dataset of pitch curves for music performance assessment☆10Jun 5, 2023Updated 2 years ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Bringing core concepts from anywidget to R☆20Aug 10, 2025Updated 7 months ago
- ☆33May 2, 2025Updated 10 months ago
- A plugin for exporting RDF from OMERO☆15Feb 27, 2026Updated 3 weeks ago