bioio-devs / bioioLinks
Image reading, metadata management, and image writing for Microscopy images in Python
☆94Updated last month
Alternatives and similar repositories for bioio
Users that are interested in bioio are comparing it to the libraries listed below
Sorting:
- ☆51Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆46Updated last week
- Accurate and efficient spot detection for microscopy data☆92Updated this week
- ☆84Updated 4 months ago
- StarDist plugin for napari☆40Updated 11 months ago
- ☆39Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆76Updated 3 weeks ago
- A template repo used to make new napari plugins☆26Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- ☆23Updated last month
- ☆15Updated 2 weeks ago
- GPU-accelerated Image Processing library for Python☆51Updated 3 weeks ago
- Command-line client for Fractal☆46Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated 3 weeks ago
- native Python dataclasses for the OME data model☆58Updated 3 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated this week
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- ☆31Updated last year
- Cookiecutter for napari plugins☆69Updated 8 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 3 months ago