Image reading, metadata management, and image writing for Microscopy images in Python
☆132Sep 15, 2026Updated this week
Alternatives and similar repositories for bioio
Users that are interested in bioio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 2 months ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Sep 7, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 9 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated last month
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆134Sep 6, 2026Updated 2 weeks ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Aug 31, 2026Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 4, 2026Updated 2 weeks ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Sep 2, 2026Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆143Jun 8, 2026Updated 3 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆258Updated this week
- A napari plugin for zarr backed OME-NGFF images☆54Aug 31, 2026Updated 2 weeks ago
- ☆16Updated this week
- Deep-learning library for image restoration.☆152Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 2 months ago
- GPU-accelerated Image Processing library for Python☆65Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated last month
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆48Jun 7, 2026Updated 3 months ago
- An introduction to OME-Zarr for big bioimaging data☆28Sep 1, 2026Updated 2 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 9 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆52May 1, 2025Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆171Updated this week
- Reference implementation of the Graph Exchange File Format☆42Sep 7, 2026Updated last week
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆64Aug 20, 2026Updated last month
- Transformer-based cell tracking for live-cell microscopy☆153Sep 11, 2026Updated last week
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆32Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 9 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆99Sep 8, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆245Aug 14, 2026Updated last month
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 11 months ago
- Cell tracking and segmentation software☆209Aug 13, 2026Updated last month
- ☆27Sep 11, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated last year
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆81Sep 7, 2026Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆184Jul 30, 2026Updated last month