bioio-devs / bioio
Image reading, metadata management, and image writing for Microscopy images in Python
☆53Updated last week
Related projects ⓘ
Alternatives and complementary repositories for bioio
- native Python dataclasses for the OME data model☆51Updated this week
- Browse your OMERO database from within napari.☆33Updated this week
- ☆43Updated 3 weeks ago
- ☆21Updated last month
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated 3 weeks ago
- Command-line client for Fractal☆45Updated this week
- Multiple file format reading directly into napari using pure Python☆33Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆80Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated last week
- ☆15Updated 2 years ago
- ☆12Updated 6 months ago
- StarDist plugin for napari☆36Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆49Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆21Updated 2 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Main tasks for the Fractal analytics platform☆14Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆54Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- 1d plotting in napari-based canvas.☆24Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆54Updated this week