hms-dbmi / vizarrView external linksLinks
A minimal Zarr image viewer based on Viv.
☆181Feb 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for vizarr
Users that are interested in vizarr are comparing it to the libraries listed below
Sorting:
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆333Feb 1, 2026Updated last week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆224Updated this week
- Python API and Jupyter widget for Vitessce☆61Feb 5, 2026Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆153Feb 5, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- ☆18Feb 5, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Jan 19, 2026Updated 3 weeks ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆238Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Feb 6, 2026Updated last week
- Bio-Formats image file format to raw format converter☆103Dec 17, 2025Updated last month
- Cloud-Optimize your Scientific Data as Virtual Zarr stores, using xarray syntax.☆261Feb 5, 2026Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 2 months ago
- Javascript implementation of Zarr☆154Jun 7, 2024Updated last year
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 3 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- Raw format to OME-TIFF converter☆56Jan 21, 2026Updated 3 weeks ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Command-line client for Fractal☆48Updated this week
- Cloud-friendly access to archival data☆359Jan 21, 2026Updated 3 weeks ago
- native Python dataclasses for the OME data model☆65Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 2 months ago
- ☆41Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆61Updated this week
- Interface to the Bioformats Java library☆13Dec 19, 2025Updated last month
- A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays☆101Feb 1, 2026Updated last week
- A dataset for loading zarr files to be used in machine learning training pipelines☆34Jan 5, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Dec 22, 2025Updated last month
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆104Sep 26, 2025Updated 4 months ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 5 months ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 3 weeks ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Feb 7, 2026Updated last week
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 3 weeks ago
- Disk-to-disk chunk transformation for chunked arrays.☆176Updated this week
- Pydantic models for Zarr☆46Jan 9, 2026Updated last month
- multimodal whole slide image registration in a graph structure☆100Jul 4, 2024Updated last year