hms-dbmi / vizarrLinks
A minimal Zarr image viewer based on Viv.
☆153Updated 3 weeks ago
Alternatives and similar repositories for vizarr
Users that are interested in vizarr are comparing it to the libraries listed below
Sorting:
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆134Updated last month
- serve Zarr datasets via HTTP☆28Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 4 months ago
- Python project containing Ice remoting code for OMERO☆24Updated last week
- Interface to the Bioformats Java library☆13Updated 5 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆42Updated this week
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆199Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆28Updated last year
- A CodecPipeline for zarr-python backed by zarrs (Rust)☆36Updated this week
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆310Updated last week
- Pydantic models for OME-NGFF☆24Updated this week
- Create web-based OME-Zarr galleries☆18Updated last month
- Bio-Formats image file format to raw format converter☆92Updated 3 weeks ago
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆34Updated 2 months ago
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆18Updated this week
- ☆43Updated this week
- ☆17Updated last week
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆34Updated last week
- scalable multiscale image pyramids in python☆28Updated 11 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆79Updated 2 weeks ago
- Command-line client for Fractal☆46Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- A dataset for loading zarr files to be used in machine learning training pipelines☆33Updated 3 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated this week