Alternatives and similar repositories for omero-ms-zarr

Users that are interested in omero-ms-zarr are comparing it to the libraries listed below

• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆54Updated 3 months ago
• ome / omero-cli-zarr
  ☆18Updated last month
• jni / affinder
  Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
  ☆21Updated 3 months ago
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆17Updated 4 months ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆35Updated last week
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆43Updated 3 months ago
• acquire-project / acquire-zarr
  Streaming directly to Zarr on the file system or S3
  ☆23Updated last week
• PolusAI / bfio
  Interface to the Bioformats Java library
  ☆13Updated 3 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆64Updated last week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 2 months ago
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆31Updated 2 years ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆31Updated last month
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆52Updated this week
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆54Updated this week
• mobie / mobie-viewer-fiji
  ☆39Updated this week
• JaneliaSciComp / zarrcade
  Create web-based OME-Zarr galleries
  ☆21Updated last week
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆24Updated 8 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 8 months ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆27Updated this week
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆21Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• guiwitz / napari_demo
  ☆23Updated 4 years ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆40Updated last month
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated 2 weeks ago
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆30Updated last year
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆167Updated 3 weeks ago
• ome / omero-py
  Python project containing Ice remoting code for OMERO
  ☆27Updated last month
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆142Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 4 months ago