weigertlab / napari-spotiflowLinks
Spotiflow plugin for napari
☆13Updated 2 weeks ago
Alternatives and similar repositories for napari-spotiflow
Users that are interested in napari-spotiflow are comparing it to the libraries listed below
Sorting:
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆40Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- ☆11Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- Use Napari Viewer to display CZI images☆12Updated 3 years ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆24Updated 5 months ago
- A plugin to read whole slide images within napari.☆21Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆24Updated this week
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆20Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 2 years ago
- ☆15Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 7 months ago
- ☆51Updated 5 months ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated 2 years ago
- Template for creating a new python repository☆13Updated last week
- Browse your OMERO database from within napari.☆39Updated last week
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆15Updated last month
- ☆14Updated this week
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated this week
- 1d plotting in napari-based canvas.☆26Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- dask empowered fast4dreg☆14Updated 10 months ago