kirchhausenlab / incasem
Automated Segmentation of cellular substructures in Electron Microscopy
☆17Updated 3 weeks ago
Alternatives and similar repositories for incasem:
Users that are interested in incasem are comparing it to the libraries listed below
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- A template repo used to make new napari plugins☆17Updated last week
- A napari plugin to view and edit metadata☆10Updated last year
- Affinity based segmentation algorithms and tools☆9Updated 3 years ago
- MorphoFeatures code and data☆20Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Tools for handling FIB-SEM data and annotations☆21Updated 2 weeks ago
- dask empowered fast4dreg☆11Updated 4 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- StarDist plugin for napari☆38Updated 7 months ago
- A plugin to read whole slide images within napari.☆17Updated last month
- Multi-Object Tracker using Integer Linear Equations☆30Updated 2 weeks ago
- ☆10Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- ☆66Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- ☆23Updated 7 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 2 weeks ago