Automated Segmentation of cellular substructures in Electron Microscopy
☆18Jan 28, 2026Updated 4 months ago
Alternatives and similar repositories for incasem
Users that are interested in incasem are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆33Mar 24, 2026Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆14May 15, 2023Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 9 months ago
- A library to facilitate machine learning on multi-dimensional images.☆90May 22, 2026Updated last week
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated 3 weeks ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Mar 6, 2026Updated 2 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Image correction software for chromatic shifts in fluorescence microscopic images☆26Oct 17, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Mar 3, 2026Updated 2 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- clathrin-mediated endocytosis analysis☆11May 21, 2026Updated last week
- 🌈☆69Oct 10, 2025Updated 7 months ago
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77May 22, 2026Updated last week
- Open source volume electron microscopy (vEM) datasets for connectomics.☆18Nov 13, 2024Updated last year
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The …☆14May 4, 2026Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated last month
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 9 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆38May 8, 2026Updated 3 weeks ago
- Deep Learning for Scientific Image Analysis☆18Jul 2, 2025Updated 10 months ago
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- Illustrations created by Henning Falk for the Zarr community☆48Jan 29, 2025Updated last year
- A portal for viewing FIB-SEM datasets☆13May 13, 2026Updated 2 weeks ago
- Simple watershed and agglomeration library for affinity graphs.☆30Sep 18, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell tracking and segmentation software☆178May 14, 2026Updated 2 weeks ago
- Segmentation and analysis of the endoplasmic reticulum facilitated by a vision transformer segmentation model☆14Nov 19, 2023Updated 2 years ago
- MorphoFeatures code and data☆22May 11, 2026Updated 2 weeks ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Apr 18, 2026Updated last month
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 3 months ago