Alternatives and similar repositories for incasem

Users that are interested in incasem are comparing it to the libraries listed below

• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆18Updated 4 months ago
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 5 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆26Updated 2 weeks ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆18Updated last week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 7 months ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆30Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated last month
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated 4 months ago
• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆17Updated 2 years ago
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆12Updated 9 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆44Updated 4 months ago
• volume-em / empanada-napari
  Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
  ☆24Updated 4 months ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆28Updated 4 months ago
• juglab / featureforest
  A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier
  ☆20Updated this week
• haesleinhuepf / napari-assistant
  ☆30Updated 4 months ago
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆91Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆38Updated 2 weeks ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆37Updated last week
• abcucberkeley / PetaKit5D
  ☆46Updated last week
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆17Updated last month
• andy-sweet / napari-metadata
  A napari plugin to view and edit metadata
  ☆10Updated 2 years ago
• miura / NEUBIAS_AnalystSchool2020
  ☆13Updated 5 years ago
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆18Updated 2 weeks ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated this week
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 11 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 6 months ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 9 months ago