Automated Segmentation of cellular substructures in Electron Microscopy
☆18Jan 28, 2026Updated 8 months ago
Alternatives and similar repositories for incasem
Users that are interested in incasem are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari☆38Updated this week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆14May 15, 2023Updated 3 years ago
- Template for creating a new python repository☆13Sep 22, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆93Sep 7, 2026Updated 3 weeks ago
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated last year
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- Block-wise task scheduling for large nD volumes.☆34Sep 2, 2026Updated 3 weeks ago
- Resources for Heinrich et al., 2021☆20May 28, 2021Updated 5 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Feb 9, 2020Updated 6 years ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 3 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Image correction software for chromatic shifts in fluorescence microscopic images☆26Oct 17, 2025Updated 11 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 6 months ago
- Open source volume electron microscopy (vEM) datasets for connectomics.☆19Aug 17, 2026Updated last month
- clathrin-mediated endocytosis analysis☆11May 29, 2026Updated 4 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 5 years ago
- 🌈☆70Oct 10, 2025Updated 11 months ago
- Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microsc…☆40Jul 2, 2026Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Aug 11, 2026Updated last month
- StarDist plugin for napari☆42Aug 24, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated last year
- KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural…☆77Sep 10, 2026Updated 2 weeks ago
- Deep Learning for Scientific Image Analysis☆18Jul 2, 2025Updated last year
- CryoSPARC is the state-of-the-art platform used globally for obtaining 3D structural information from single particle cryo-EM data. The …☆16May 4, 2026Updated 4 months ago
- A portal for viewing FIB-SEM datasets☆13May 13, 2026Updated 4 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Aug 25, 2026Updated last month
- Segmentation and analysis of the endoplasmic reticulum facilitated by a vision transformer segmentation model☆14Nov 19, 2023Updated 2 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Sep 24, 2026Updated last week
- scripts for using spark on janelia's cluster☆12Nov 12, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Simple watershed and agglomeration library for affinity graphs.☆31Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 3 years ago
- MorphoFeatures code and data☆23Sep 10, 2026Updated 3 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling