Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
☆159May 13, 2026Updated last week
Alternatives and similar repositories for ngff
Users that are interested in ngff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆239May 13, 2026Updated last week
- A napari plugin for zarr backed OME-NGFF images☆50May 11, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 8 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 6 months ago
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆38Updated this week
- A minimal Zarr image viewer based on Viv.☆193May 11, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Python API and Jupyter widget for Vitessce☆66Apr 17, 2026Updated last month
- Tools for distributed alignment of massive images☆95Apr 22, 2026Updated 3 weeks ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆124May 1, 2026Updated 2 weeks ago
- Main tasks for the Fractal analytics platform☆25May 8, 2026Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70May 14, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Mar 3, 2026Updated 2 months ago
- Bio-Formats image file format to raw format converter☆108Apr 22, 2026Updated 3 weeks ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆49Updated this week
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆347May 11, 2026Updated last week
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 9 months ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- ☆44Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆22Updated this week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 3 weeks ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 9 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Apr 13, 2026Updated last month
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆131Mar 18, 2026Updated 2 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- Command-line client for Fractal☆48May 12, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Place to discuss the future design of a universal microscope hardware interface☆16May 18, 2021Updated 5 years ago
- Spatial Single Cell Analysis in Python☆571Updated this week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆116Updated this week
- Lazily load multiscale whole-slide images with openslide and dask☆33Dec 6, 2022Updated 3 years ago
- ☆33May 2, 2025Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 5 months ago