Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
☆172Oct 1, 2026Updated last week
Alternatives and similar repositories for ngff
Users that are interested in ngff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆259Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 10 months ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A minimal Zarr image viewer based on Viv.☆200Jun 22, 2026Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆39Sep 22, 2026Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated 2 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Tools for distributed alignment of massive images☆95Sep 22, 2026Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆73Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆40Oct 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆52Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Sep 30, 2026Updated last week
- Main tasks for the Fractal analytics platform☆28Updated this week
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated last week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆134Sep 6, 2026Updated last month
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆366Sep 23, 2026Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆113Sep 18, 2026Updated 3 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21May 11, 2026Updated 4 months ago
- Block-wise operations for large nD volumes☆45Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- ☆45Sep 28, 2026Updated last week
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 months ago
- ☆22Updated this week
- Raw format to OME-TIFF converter☆58Oct 1, 2026Updated last week
- ☆20Sep 17, 2026Updated 3 weeks ago
- Lightweight C++ and Python interface for datasets in zarr and N5 format☆135Jul 2, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated last year
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Sep 28, 2026Updated last week
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- Command-line client for Fractal☆49Oct 2, 2026Updated last week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆80Updated this week