GIve easy, high-level access to ome-zarr fileset
☆22Sep 22, 2025Updated 6 months ago
Alternatives and similar repositories for ez_zarr
Users that are interested in ez_zarr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 16, 2026Updated 3 weeks ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Apr 6, 2026Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Apr 7, 2026Updated last week
- A plugin for exporting RDF from OMERO☆15Feb 27, 2026Updated last month
- ☆13Aug 16, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A napari plugin for zarr backed OME-NGFF images☆46Apr 6, 2026Updated last week
- Command-line client for Fractal☆49Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated last year
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 9 months ago
- Python project containing Ice remoting code for OMERO☆28Mar 25, 2026Updated 2 weeks ago
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 2 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated last month
- Optimize image processing workflows in napari☆17May 1, 2025Updated 11 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆230Updated this week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An introduction to OME-Zarr for big bioimaging data☆25Apr 6, 2026Updated last week
- ☆37Mar 22, 2024Updated 2 years ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆31Mar 25, 2026Updated 2 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 5 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆25Updated this week
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last week
- ☆25May 16, 2023Updated 2 years ago
- Create web-based OME-Zarr galleries☆23Nov 6, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Main tasks for the Fractal analytics platform☆24Updated this week
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆33Feb 1, 2026Updated 2 months ago
- Raw format to OME-TIFF converter☆56Updated this week
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 4 months ago
- ☆15Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 8 months ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- ☆15Jul 29, 2022Updated 3 years ago
- Bio-Formats image file format to raw format converter☆104Apr 3, 2026Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆119Apr 1, 2026Updated last week
- Fractal backend☆19Updated this week
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆16Updated this week
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago