fmicompbio / ez_zarrLinks
GIve easy, high-level access to ome-zarr fileset
☆22Updated 3 months ago
Alternatives and similar repositories for ez_zarr
Users that are interested in ez_zarr are comparing it to the libraries listed below
Sorting:
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Command-line client for Fractal☆47Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆56Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 6 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- ☆41Updated 3 weeks ago
- Browse your OMERO database from within napari.☆40Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- native Python dataclasses for the OME data model☆65Updated last week
- A stable diffusion demo for napari☆11Updated 2 years ago
- Main tasks for the Fractal analytics platform☆22Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Pydantic models for OME-NGFF☆24Updated 4 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- ☆13Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated 3 weeks ago
- A relabeling tool for tiled segmentation with Dask☆17Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- ☆18Updated last month
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆15Updated this week