Alternatives and similar repositories for aicsimageio:

Users that are interested in aicsimageio are comparing it to the libraries listed below

• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆80Updated this week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆146Updated last week
• peng-lab / BaSiCPy
  ☆68Updated this week
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆130Updated 3 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆133Updated last month
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 6 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆106Updated last week
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆181Updated this week
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated 2 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆136Updated last month
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆86Updated this week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated this week
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆72Updated 3 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 8 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆75Updated 2 weeks ago
• napari / napari-animation
  A napari plugin for making animations
  ☆84Updated 6 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆149Updated last week
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆58Updated 2 weeks ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆82Updated last week
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 4 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆65Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆41Updated this week
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 5 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆72Updated 2 weeks ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆46Updated 2 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆139Updated this week