AllenCellModeling / aicsimageioLinks
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
☆215Updated 7 months ago
Alternatives and similar repositories for aicsimageio
Users that are interested in aicsimageio are comparing it to the libraries listed below
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆98Updated last week
- ☆87Updated 5 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆149Updated 2 weeks ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆202Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆166Updated 3 months ago
- Read and write life sciences file formats☆140Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆66Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- Bio-Formats image file format to raw format converter☆96Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆137Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- Command-line client for Fractal☆46Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 7 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- Accurate and efficient spot detection for microscopy data☆95Updated 2 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago
- Cell tracking and segmentation software☆134Updated 2 weeks ago
- Cookiecutter for napari plugins☆69Updated 9 months ago
- StarDist plugin for napari☆40Updated last year
- ☆51Updated 3 months ago
- A napari plugin for making animations☆87Updated last month
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated 2 weeks ago
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆147Updated last month
- Raw format to OME-TIFF converter☆55Updated 3 weeks ago