Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
☆222Dec 1, 2025Updated 5 months ago
Alternatives and similar repositories for aicsimageio
Users that are interested in aicsimageio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆124May 1, 2026Updated 2 weeks ago
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last month
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆239May 13, 2026Updated last week
- Python module utilizing libCZI for reading Zeiss CZI files.☆48Mar 31, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆50May 11, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bio-Formats image file format to raw format converter☆108Apr 22, 2026Updated 3 weeks ago
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 7 months ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆243Apr 24, 2026Updated 3 weeks ago
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 3 weeks ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 6 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆91May 6, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆116Updated this week
- Read and write life sciences file formats☆142Jun 12, 2025Updated 11 months ago
- Leica Image Format (LIF) file reader for Python☆39Mar 26, 2026Updated last month
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated 2 years ago
- ☆20Apr 27, 2026Updated 3 weeks ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated last month
- The python-microscopy environment - an open-source package for light microscopy☆97May 8, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆347May 11, 2026Updated last week
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 7 months ago
- ☆52May 1, 2025Updated last year
- Automated Cell Toolkit☆24Oct 15, 2025Updated 7 months ago
- StarDist - Object Detection with Star-convex Shapes☆1,212Feb 14, 2026Updated 3 months ago
- A minimal Zarr image viewer based on Viv.☆193May 11, 2026Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆159May 13, 2026Updated last week
- ☆23Mar 26, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- Interface to the Bioformats Java library☆14Feb 17, 2026Updated 3 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Browse your OMERO database from within napari.☆40May 1, 2026Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 3 weeks ago
- ☆14Jan 25, 2024Updated 2 years ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆56May 20, 2024Updated 2 years ago