AllenCellModeling / aicsimageioLinks
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
☆221Updated 2 months ago
Alternatives and similar repositories for aicsimageio
Users that are interested in aicsimageio are comparing it to the libraries listed below
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- Read and write life sciences file formats☆142Updated 7 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- ☆91Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆222Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆152Updated this week
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated this week
- Cell tracking and segmentation software☆168Updated this week
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Cookiecutter for napari plugins☆71Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated 3 weeks ago
- StarDist plugin for napari☆38Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Bio-Formats image file format to raw format converter☆103Updated last month
- native Python dataclasses for the OME data model☆65Updated 3 weeks ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Tools for distributed alignment of massive images☆92Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- ☆51Updated 9 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- Command-line client for Fractal☆49Updated this week
- GPU-accelerated general purpose image processing and image analysis in napari☆36Updated 9 months ago