AllenCellModeling / aicsimageioLinks
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
☆219Updated 8 months ago
Alternatives and similar repositories for aicsimageio
Users that are interested in aicsimageio are comparing it to the libraries listed below
Sorting:
- ☆85Updated 6 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆206Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated last week
- Read and write life sciences file formats☆141Updated 3 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆150Updated last month
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆168Updated 4 months ago
- Bio-Formats image file format to raw format converter☆98Updated 3 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆140Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆69Updated last month
- Open source Python library for building bioimage analysis pipelines☆181Updated last week
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 8 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- native Python dataclasses for the OME data model☆61Updated last week
- Cell tracking and segmentation software☆147Updated this week
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆150Updated last week
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- Command-line client for Fractal☆47Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- A napari plugin for making animations☆88Updated last week
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Cookiecutter for napari plugins☆70Updated 11 months ago
- StarDist plugin for napari☆39Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆72Updated last month
- ☆51Updated 5 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago