BiologyTools / BioGTK
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
☆12Updated 2 months ago
Alternatives and similar repositories for BioGTK:
Users that are interested in BioGTK are comparing it to the libraries listed below
- A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Su…☆17Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆27Updated 3 months ago
- A 3D interactivity toolbox for napari☆34Updated 4 months ago
- ☆17Updated 2 years ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- ☆47Updated 5 months ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- Dataset EXploration & Processing☆32Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Napari gaming☆17Updated 3 years ago
- ☆39Updated this week
- ☆10Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆68Updated this week
- ☆35Updated this week
- An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.☆27Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Cookiecutter for napari plugins☆69Updated 4 months ago
- Official GitHub mirror of the AutoTx intelligent background transfer service.☆27Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- Resources for teaching/preparing to teach bioimage analysis☆54Updated this week
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Command-line client for Fractal☆45Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated this week
- Particle tracking by solving linear assignment problem.☆49Updated last month