Alternatives and similar repositories for napari-sc3D-viewer:

Users that are interested in napari-sc3D-viewer are comparing it to the libraries listed below

• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 3 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆53Updated last week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• HelenaLC / SpatialData
  ☆17Updated 2 months ago
• scverse / spatialdata-io
  ☆60Updated last week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 7 months ago
• HiDiHlabs / ssam
  ☆28Updated 6 months ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆90Updated 2 weeks ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆44Updated this week
• giovp / spatialdata-sandbox
  ☆13Updated 2 weeks ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆27Updated this week
• KerenLab / CellSighter
  ☆32Updated last year
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆42Updated this week
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated 2 months ago
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆12Updated 2 weeks ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated last week
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆34Updated 5 months ago
• fish-quant / ComSeg
  comseg
  ☆19Updated 3 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆51Updated 2 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last month
• angelolab / Nimbus
  ☆16Updated 8 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 9 months ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆42Updated 9 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 7 months ago
• Michael-shannon / cellPLATO
  The 2023 version of cellPLATO
  ☆14Updated 5 months ago