A plugin to visualise 3D spatial single cell omics
☆20Oct 22, 2025Updated last year
Alternatives and similar repositories for napari-sc3D-viewer
Users that are interested in napari-sc3D-viewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A stable diffusion demo for napari☆11Jun 7, 2026Updated 5 months ago
- Spatial Single Cell transcriptomic library☆23Jan 15, 2026Updated 9 months ago
- A napari plugin for clustering objects according to their properties.☆91Nov 2, 2026Updated last week
- ☆10Nov 29, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆25Dec 2, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Nov 2, 2026Updated last week
- ☆11Jul 15, 2024Updated 2 years ago
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 8 months ago
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- Cookiecutter for napari plugins☆72Nov 6, 2024Updated 2 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Aug 3, 2026Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆46Sep 29, 2025Updated last year
- 3D shape analysis using deep learning☆32Oct 8, 2025Updated last year
- Block-wise operations for large nD volumes☆45Updated this week
- ☆15Jul 29, 2022Updated 4 years ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Sep 9, 2026Updated 2 months ago
- ☆25May 16, 2023Updated 3 years ago
- maze: match visualizer☆10Oct 11, 2021Updated 5 years ago
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- #ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720☆11May 24, 2023Updated 3 years ago
- ☆39Nov 3, 2026Updated last week
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- Volumetric data viewer in Jupyter notebooks with HoloViz Panel and Neuroglancer☆14Feb 4, 2025Updated last year
- ☆25Jul 22, 2026Updated 3 months ago
- Interacting Active Surfaces☆10Jul 12, 2022Updated 4 years ago
- Process and analyze surfaces using vedo in napari.☆26May 13, 2024Updated 2 years ago
- 3D Traction Force Microscopy with Python. Calculate cell-generated forces in collagen or other (nonlinear) biopolymer networks.☆18Updated this week
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Oct 28, 2026Updated last week
- Napari plugin for vollseg☆14Jul 16, 2025Updated last year
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated last year
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 3 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Oct 15, 2026Updated 3 weeks ago
Are these results useful?