GuignardLab / napari-sc3D-viewerLinks
A plugin to visualise 3D spatial single cell omics
☆20Updated 2 months ago
Alternatives and similar repositories for napari-sc3D-viewer
Users that are interested in napari-sc3D-viewer are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆13Updated last month
- Interactive visualization of spatial omics data☆73Updated last week
- Python API and Jupyter widget for Vitessce☆60Updated last month
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- An introduction to OME-Zarr for big bioimaging data☆22Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- ☆19Updated 3 weeks ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 6 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- ☆85Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- ☆29Updated last year
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- ☆36Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- Deep learning based spot detection for FISH images.☆26Updated 3 months ago
- ☆27Updated last year
- Fast reconstruction of spatial networks from bioimages.☆25Updated 8 months ago
- QuPath extension for Cellsparse☆19Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- 3D segmentation for cells and organoids of 3D multichannel images☆25Updated 6 months ago