GuignardLab / napari-sc3D-viewer
A plugin to visualise 3D spatial single cell omics
☆22Updated 10 months ago
Alternatives and similar repositories for napari-sc3D-viewer:
Users that are interested in napari-sc3D-viewer are comparing it to the libraries listed below
- Interactive visualization of spatial omics data☆48Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- ☆48Updated this week
- ☆17Updated last month
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Whole slide image registration through wsireg in napari.☆13Updated last year
- ☆30Updated last year
- ☆29Updated 9 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆17Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆36Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆25Updated 4 months ago
- Interoperability between SpatialData and the Xenium Explorer☆17Updated 6 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- ☆25Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆38Updated this week
- https://harpy.readthedocs.io/en/latest/☆14Updated this week
- ☆11Updated this week
- Python API and Jupyter widget for Vitessce☆43Updated last week
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- ☆27Updated 4 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆16Updated last week
- QuPath extension to interactively align images☆21Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- A scalable machine learning pipeline for probe specificity prediction.☆13Updated last year
- The 2023 version of cellPLATO☆13Updated 3 months ago