Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
☆56Oct 16, 2026Updated this week
Alternatives and similar repositories for iohub
Users that are interested in iohub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago
- Main tasks for the Fractal analytics platform☆28Oct 7, 2026Updated last week
- computer vision models for single-cell phenotyping☆104Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆74Updated this week
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆16Mar 25, 2026Updated 6 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆262Updated this week
- A fully scalable robust image feature extraction library.☆30Oct 8, 2026Updated last week
- Command-line client for Fractal☆49Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 months ago
- Official implementation of MuViT (CVPR 2026), a ViT-based architecture for multi-scale modelling of gigapixel microscopy images.☆49Jun 7, 2026Updated 4 months ago
- Modern Bio-Formats wrapper with clean lazy Python API☆24Jun 25, 2026Updated 3 months ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Sep 6, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Morphological features from images and masks made easy.☆52Oct 6, 2026Updated last week
- A library to facilitate machine learning on multi-dimensional images.☆93Oct 5, 2026Updated last week
- Acquire: a multi-camera video streaming software focusing on microscopy☆26Oct 30, 2024Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆40Oct 10, 2026Updated last week
- ☆25May 16, 2023Updated 3 years ago
- Streaming directly to Zarr on the file system or S3☆35Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆132Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- dask empowered fast4dreg☆17Mar 11, 2026Updated 7 months ago
- Various tools for creating and manipulating Zarr V3 data with the zarrs Rust crate☆36Feb 1, 2026Updated 8 months ago
- Fast 4-coloring of instance segmentation label images (N-color relabeling) for Python, C++ core☆16Sep 28, 2026Updated 2 weeks ago
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆80Updated this week
- Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.☆47Updated this week
- Light microscopy simulation in python.☆55Updated this week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆30Jun 16, 2026Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A dataset for loading zarr files to be used in machine learning training pipelines☆37Jan 5, 2026Updated 9 months ago
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆177Oct 8, 2026Updated last week
- native Python dataclasses for the OME data model☆68Updated this week
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 6 months ago
- Use dimensionality reduction to create thumnails for high-dimensional imaging☆12May 21, 2026Updated 4 months ago
- ☆13Aug 14, 2026Updated 2 months ago