czbiohub-sf / iohub
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
☆34Updated last week
Alternatives and similar repositories for iohub:
Users that are interested in iohub are comparing it to the libraries listed below
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- Pydantic models for OME-NGFF☆23Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆32Updated last month
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated 2 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆23Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated last month
- ilastik plugin for napari☆14Updated 11 months ago
- ☆23Updated 6 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago
- Process images using SimpleITK in napari☆20Updated 5 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated last week
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- python tools for BigDataViewer☆22Updated 2 months ago
- Command-line client for Fractal☆45Updated this week
- ☆16Updated this week
- ☆20Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- A self-supervised denoising algorithm.☆24Updated 11 months ago
- ☆29Updated 11 months ago
- 1d plotting in napari-based canvas.☆26Updated last week