Alternatives and similar repositories for iohub

Users that are interested in iohub are comparing it to the libraries listed below

• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆64Updated 2 weeks ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆40Updated last week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 2 months ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 4 months ago
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated this week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆54Updated last week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• fractal-analytics-platform / fractal-tasks-core
  Main tasks for the Fractal analytics platform
  ☆22Updated this week
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆72Updated last year
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆24Updated 8 months ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆51Updated this week
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆29Updated last week
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆91Updated 2 weeks ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆19Updated 3 weeks ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆70Updated 2 weeks ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated this week
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆45Updated 6 months ago
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆28Updated this week
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆52Updated last week
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆34Updated last week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 2 weeks ago
• haesleinhuepf / napari-assistant
  ☆33Updated 6 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 8 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆60Updated last year
• juglab / napari-n2v
  A self-supervised denoising algorithm.
  ☆28Updated last year
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆36Updated this week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆58Updated 4 months ago