native Python dataclasses for the OME data model
☆67Apr 2, 2026Updated 3 months ago
Alternatives and similar repositories for ome-types
Users that are interested in ome-types are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆52May 28, 2026Updated last month
- ☆22May 25, 2026Updated last month
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆165Updated this week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆245Updated this week
- Python project containing Ice remoting code for OMERO☆28Jun 16, 2026Updated 3 weeks ago
- OME model (specification, code generator, implementation)☆17Jun 3, 2026Updated last month
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Updated this week
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆96Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- Place to discuss the future design of a universal microscope hardware interface☆16May 18, 2021Updated 5 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 9 months ago
- Browse your OMERO database from within napari.☆40Updated this week
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 2 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 7 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Jun 25, 2026Updated last week
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 3 weeks ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 9 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆65Oct 27, 2024Updated last year
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jun 29, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 11 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 10 months ago
- Reference implementation of the Graph Exchange File Format☆39Jun 29, 2026Updated last week
- Create web-based OME-Zarr galleries☆25May 26, 2026Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆176May 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆71Updated this week
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- 🚚 AutoTx 🪄 - a smart background file transfer service for Windows.☆28Jun 24, 2026Updated last week
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- A stable diffusion demo for napari☆11Jun 7, 2026Updated last month
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 4 months ago