native Python dataclasses for the OME data model
☆68Apr 2, 2026Updated 3 months ago
Alternatives and similar repositories for ome-types
Users that are interested in ome-types are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Jul 13, 2026Updated 2 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 7 months ago
- A napari plugin for zarr backed OME-NGFF images☆53Jul 21, 2026Updated last week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆166Jul 17, 2026Updated last week
- An OMERO CLI plugin for creating transfer packets between OMERO servers.☆19Jun 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated 2 years ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆250Updated this week
- Python project containing Ice remoting code for OMERO☆28Jun 16, 2026Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- OME model (specification, code generator, implementation)☆17Jun 3, 2026Updated last month
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Jul 1, 2026Updated 3 weeks ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 8 months ago
- Place to discuss the future design of a universal microscope hardware interface☆17May 18, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆72Updated this week
- Browse your OMERO database from within napari.☆40Jul 1, 2026Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆97Jul 7, 2026Updated 3 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Jun 25, 2026Updated last month
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 7 months ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Jul 20, 2026Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆180May 14, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated last month
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated 11 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Jul 20, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆27Jul 1, 2026Updated 3 weeks ago
- ☆23Apr 1, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 11 months ago
- Create web-based OME-Zarr galleries☆26Jul 7, 2026Updated 3 weeks ago
- Streaming directly to Zarr on the file system or S3☆30Jul 20, 2026Updated last week
- Discover, install, and share napari plugins☆54Mar 6, 2026Updated 4 months ago
- Read Carl Zeiss image files (CZI).☆46Jun 13, 2026Updated last month
- Cookiecutter for napari plugins☆73Nov 6, 2024Updated last year
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆124Jul 21, 2026Updated last week