ome / omero-cli-transferLinks
An OMERO CLI plugin for creating transfer packets between OMERO servers.
☆18Updated last week
Alternatives and similar repositories for omero-cli-transfer
Users that are interested in omero-cli-transfer are comparing it to the libraries listed below
Sorting:
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- A napari plugin for zarr backed OME-NGFF images☆37Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆50Updated this week
- Command-line client for Fractal☆46Updated this week
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- GIve easy, high-level access to ome-zarr fileset☆20Updated this week
- ☆17Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated this week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆20Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆101Updated 3 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- Main tasks for the Fractal analytics platform☆20Updated 2 weeks ago
- ☆51Updated 4 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated last month
- ☆39Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 11 months ago
- Pydantic models for OME-NGFF☆24Updated 2 weeks ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- 1d plotting in napari-based canvas.☆26Updated this week