ome / omero-cli-transferLinks
An OMERO CLI plugin for creating transfer packets between OMERO servers.
☆19Updated 2 weeks ago
Alternatives and similar repositories for omero-cli-transfer
Users that are interested in omero-cli-transfer are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Command-line client for Fractal☆47Updated this week
- Browse your OMERO database from within napari.☆39Updated last week
- native Python dataclasses for the OME data model☆64Updated last week
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- A napari plugin for zarr backed OME-NGFF images☆40Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆54Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆27Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- StarDist plugin for napari☆39Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 2 months ago
- ☆18Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- ☆51Updated 6 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated 2 weeks ago
- A napari plugin to view and edit metadata☆12Updated 2 years ago
- ☆39Updated this week
- A template repo used to make new napari plugins☆28Updated 2 weeks ago
- Bio-Formats image file format to raw format converter☆101Updated 2 months ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆14Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated last week