ome / omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
☆17Updated 2 months ago
Alternatives and similar repositories for omero-cli-transfer:
Users that are interested in omero-cli-transfer are comparing it to the libraries listed below
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- native Python dataclasses for the OME data model☆55Updated this week
- Browse your OMERO database from within napari.☆35Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 7 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆21Updated this week
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆14Updated this week
- Command-line client for Fractal☆45Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated 2 weeks ago
- ☆46Updated 4 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 3 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- GIve easy, high-level access to ome-zarr fileset☆13Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆30Updated last week
- ☆23Updated 5 months ago
- Python project containing Ice remoting code for OMERO☆23Updated last month
- StarDist plugin for napari☆37Updated 6 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆74Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- ☆12Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago