Alternatives and similar repositories for empanada-napari

Users that are interested in empanada-napari are comparing it to the libraries listed below

• guiwitz / napari-serialcellpose
  ☆15Updated 2 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆21Updated 2 months ago
• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated last month
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last month
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆14Updated last month
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆11Updated 6 months ago
• tlambert03 / microsim
  ☆33Updated last week
• constantinpape / affogato
  Affinity based segmentation algorithms and tools
  ☆10Updated 3 weeks ago
• fractal-analytics-platform / ngio
  NGIO is a Python library to streamline OME-Zarr image analysis workflows.
  ☆14Updated last week
• guiwitz / napari-skimage
  A minimal dependency napari plugin giving access to scikit-image functions
  ☆18Updated last month
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 3 weeks ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last week
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆17Updated last month
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 8 months ago
• andy-sweet / napari-metadata
  A napari plugin to view and edit metadata
  ☆10Updated 2 years ago
• NEUBIAS / Defragmentation_TrainingSchool_EOSC-Life_2022
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…
  ☆15Updated 2 years ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last month
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆32Updated 3 years ago
• guiwitz / napari-convpaint
  Segment images by pixel classification based on pre-trained convolutional layer feature extraction
  ☆33Updated last month
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated last month
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆23Updated 3 weeks ago
• zoccoler / napari-flim-phasor-plotter
  ☆10Updated 2 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 9 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 10 months ago
• computational-cell-analytics / dl-for-micro
  Course and exercises on deep learning for microscopy image analysis
  ☆17Updated this week
• haesleinhuepf / devbio-napari
  ☆49Updated last month
• sebi06 / czitools
  This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…
  ☆13Updated 3 weeks ago