volume-em / empanada-napari
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
☆20Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for empanada-napari
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- Tools for handling FIB-SEM data and annotations☆21Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated last month
- Affinity based segmentation algorithms and tools☆9Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- A 3D interactivity toolbox for napari☆32Updated last month
- ☆15Updated 2 years ago
- Course and exercises on deep learning for microscopy image analysis☆13Updated 8 months ago
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- ☆21Updated 2 months ago
- ☆11Updated 9 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆53Updated 3 weeks ago
- ☆10Updated 3 months ago
- ☆29Updated 7 months ago
- Main tasks for the Fractal analytics platform☆14Updated this week
- Multi-Object Tracker using Integer Linear Equations☆27Updated this week
- StarDist plugin for napari☆36Updated 2 months ago
- A napari plugin to view and edit metadata☆10Updated last year
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- 3D shape analysis using deep learning☆21Updated last year