volume-em / empanada-napariLinks
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
☆24Updated 6 months ago
Alternatives and similar repositories for empanada-napari
Users that are interested in empanada-napari are comparing it to the libraries listed below
Sorting:
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated last month
- Tools for handling FIB-SEM data and annotations☆22Updated 6 months ago
- ☆15Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- ☆36Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 8 months ago
- dask empowered fast4dreg☆15Updated 11 months ago
- Spotiflow plugin for napari☆13Updated last month
- ☆51Updated 5 months ago
- Template for creating a new python repository☆13Updated last month
- ☆41Updated this week
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Course and exercises on deep learning for microscopy image analysis☆19Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 5 months ago
- ☆11Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 6 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Multiple file format reading directly into napari using pure Python☆38Updated 2 weeks ago
- StarDist plugin for napari☆39Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆88Updated 2 weeks ago
- A template repo used to make new napari plugins☆27Updated this week
- Browse your OMERO database from within napari.☆39Updated 3 weeks ago
- Affinity based segmentation algorithms and tools☆10Updated 5 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆20Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago