volume-em / empanada-napariLinks
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
☆24Updated 4 months ago
Alternatives and similar repositories for empanada-napari
Users that are interested in empanada-napari are comparing it to the libraries listed below
Sorting:
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated this week
- ☆15Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- Tools for handling FIB-SEM data and annotations☆22Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 7 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆18Updated last week
- Spotiflow plugin for napari☆13Updated 3 months ago
- A template repo used to make new napari plugins☆26Updated 2 weeks ago
- Template for creating a new python repository☆11Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 11 months ago
- ☆32Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 4 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 4 months ago
- dask empowered fast4dreg☆12Updated 9 months ago
- ☆40Updated 2 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆20Updated this week
- ☆23Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Updated last week
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- ☆51Updated 4 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 4 months ago
- Browse your OMERO database from within napari.☆38Updated 2 weeks ago