Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
☆33Mar 24, 2026Updated last month
Alternatives and similar repositories for empanada-napari
Users that are interested in empanada-napari are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 11 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Tools for handling FIB-SEM data and annotations☆21Apr 4, 2025Updated last year
- dask empowered fast4dreg☆16Mar 11, 2026Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- Running compute-intense parts of BigStitcher distributed☆30Updated this week
- ☆12Mar 18, 2024Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- A collection of useful python utilities from True North Intelligent Algorithms☆45May 2, 2026Updated last week
- ☆15Mar 10, 2020Updated 6 years ago
- Spotiflow plugin for napari☆17Feb 2, 2026Updated 3 months ago
- ☆24Apr 7, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A portal for viewing FIB-SEM datasets☆13Apr 14, 2026Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 5 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Command-line client for Fractal☆48Updated this week
- MorphoFeatures code and data☆22May 4, 2023Updated 3 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 5 months ago
- Versatile acquisition software for serial block-face electron microscopy☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆92Mar 24, 2026Updated last month
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 10 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated last year
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- ☆23Mar 26, 2021Updated 5 years ago
- ☆11Apr 22, 2026Updated 2 weeks ago
- ☆15Apr 1, 2026Updated last month
- Block-wise task scheduling for large nD volumes.☆32May 4, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool for segmentation in bioimaging☆37May 4, 2026Updated last week
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- ☆219Feb 4, 2026Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 weeks ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆125Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆52Apr 8, 2026Updated last month
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated 3 weeks ago