volume-em / empanada-napariLinks
Panoptic segmentation algorithms for 2D and 3D electron microscopy in napari
☆23Updated 2 months ago
Alternatives and similar repositories for empanada-napari
Users that are interested in empanada-napari are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆17Updated this week
- ☆15Updated 2 years ago
- Tools for handling FIB-SEM data and annotations☆22Updated 3 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Affinity based segmentation algorithms and tools☆10Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- dask empowered fast4dreg☆11Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated 11 months ago
- A template repo used to make new napari plugins☆26Updated last week
- ☆51Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆34Updated 3 months ago
- Spotiflow plugin for napari☆12Updated last month
- Panoptic segmentation algorithms for 2D and 3D electron microscopy images☆2Updated 2 years ago
- ☆39Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆32Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆11Updated 3 weeks ago
- Multi-Object Tracker using Integer Linear Equations☆36Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆92Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Annotate microscopy images for CNN classifier☆11Updated 3 years ago
- ☆23Updated 2 weeks ago