Alternatives and similar repositories for ome-zarr-py:

Users that are interested in ome-zarr-py are comparing it to the libraries listed below

• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆132Updated last month
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆213Updated 3 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆86Updated this week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆91Updated 3 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆56Updated 3 weeks ago
• ome / omero-py
  Python project containing Ice remoting code for OMERO
  ☆23Updated 3 weeks ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated last week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆152Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆84Updated this week
• peng-lab / BaSiCPy
  ☆71Updated last month
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆35Updated this week
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆62Updated this week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated this week
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆25Updated this week
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆148Updated last week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆42Updated 2 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated 2 weeks ago
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆34Updated last week
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated last week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 6 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 9 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated 3 weeks ago
• allen-cell-animated / agave
  ☆41Updated this week
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆75Updated 4 months ago
• napari / napari-animation
  A napari plugin for making animations
  ☆84Updated 8 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆137Updated this week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆139Updated 2 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 8 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 7 months ago
• haesleinhuepf / devbio-napari
  ☆49Updated last week