Alternatives and similar repositories for ome-zarr-py

Users that are interested in ome-zarr-py are comparing it to the libraries listed below

• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆149Updated last week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆110Updated 3 weeks ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated last month
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆56Updated this week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆102Updated last month
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated last week
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading, writing and validating OME-Zarr (meta)data
  ☆36Updated last week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆176Updated this week
• peng-lab / BaSiCPy
  ☆91Updated 2 months ago
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆55Updated 2 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆89Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆30Updated 2 weeks ago
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆42Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆79Updated last year
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆76Updated last week
• haesleinhuepf / devbio-napari
  ☆51Updated 8 months ago
• clEsperanto / pyclesperanto
  GPU-accelerated Image Processing library for Python
  ☆53Updated 2 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated 5 months ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆21Updated 6 months ago
• haesleinhuepf / napari-assistant
  ☆33Updated 8 months ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆48Updated this week
• napari / napari-animation
  A napari plugin for making animations
  ☆93Updated 2 weeks ago
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆40Updated 2 weeks ago
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 4 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆92Updated last week
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆37Updated last week