Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
☆225Feb 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for ome-zarr-py
Users that are interested in ome-zarr-py are comparing it to the libraries listed below
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Feb 26, 2026Updated last week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- A minimal Zarr image viewer based on Viv.☆186Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated 7 months ago
- ☆19Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 5 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆37Feb 11, 2026Updated 3 weeks ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆103Feb 18, 2026Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆66Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Feb 25, 2026Updated last week
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 5 months ago
- Create web-based OME-Zarr galleries☆22Nov 6, 2025Updated 4 months ago
- Command-line client for Fractal☆48Updated this week
- ☆41Feb 13, 2026Updated 3 weeks ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 3 months ago
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆336Feb 26, 2026Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 7 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆50Updated this week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 3 weeks ago
- Python project containing Ice remoting code for OMERO☆28Feb 17, 2026Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆44Feb 23, 2026Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated 11 months ago
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated 3 weeks ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated last month
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated this week
- Illustrations created by Henning Falk for the Zarr community☆44Jan 29, 2025Updated last year
- A dataset for loading zarr files to be used in machine learning training pipelines☆35Jan 5, 2026Updated 2 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated last month
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- Pydantic models for Zarr☆48Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 3 months ago
- Zarr core protocol for storage and retrieval of N-dimensional typed arrays☆104Sep 26, 2025Updated 5 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 8 months ago
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- ☆18Dec 9, 2025Updated 3 months ago
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 11 months ago