glarue / reciprologsLinks
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
☆13Updated last year
Alternatives and similar repositories for reciprologs
Users that are interested in reciprologs are comparing it to the libraries listed below
Sorting:
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 11 months ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- HyPhy standalone analyses☆51Updated 3 weeks ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated last week
- perSVade: personalized Structural Variation detection☆40Updated last week
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Updated 8 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- Scripting analyses of genomes in Ensembl Plants☆41Updated 3 weeks ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- ☆21Updated 6 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- ☆48Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19Updated 8 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago