glarue / reciprologsLinks
Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
☆13Updated last year
Alternatives and similar repositories for reciprologs
Users that are interested in reciprologs are comparing it to the libraries listed below
Sorting:
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated 3 weeks ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 10 months ago
- perSVade: personalized Structural Variation detection☆40Updated 4 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 4 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆45Updated 4 months ago
- orthology assignment using phylogenetic and network analyses☆53Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆21Updated 6 years ago
- A Nextflow pipeline for evaluating assembly quality☆38Updated last month
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- new repo☆28Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated last month
- ☆20Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆51Updated 7 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆49Updated 3 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago