Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
☆14Jun 6, 2024Updated 2 years ago
Alternatives and similar repositories for reciprologs
Users that are interested in reciprologs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- rebuilds and completes models of protein complexes using AlphaFold2☆18May 20, 2026Updated last month
- ORF prediction using python☆10Aug 24, 2021Updated 4 years ago
- Snakemake tutorial materials☆19Mar 9, 2020Updated 6 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Programs used in the lab for various tasks☆14Mar 5, 2023Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- ☆14Nov 29, 2025Updated 7 months ago
- ☆13Apr 7, 2023Updated 3 years ago
- The cattle Genotype-Tissue Expression atlas v1☆29Mar 14, 2023Updated 3 years ago
- ☆23Apr 8, 2026Updated 2 months ago
- ☆17Oct 7, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆16Jul 7, 2025Updated 11 months ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- R package for single-cell comparative regulatory analysis☆11Jun 26, 2021Updated 5 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Some useful gadgets☆12Mar 14, 2022Updated 4 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆57Jun 20, 2026Updated 2 weeks ago
- ☆35Dec 24, 2020Updated 5 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆28Jun 13, 2026Updated 3 weeks ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 8 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago
- ☆11Nov 21, 2025Updated 7 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).☆26Feb 3, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 6 years ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 2 years ago
- A tool for protein and protein complex structure prediction.☆28Jun 13, 2025Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 5 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated last month
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago