Alternatives and similar repositories for genome_coverage_plotter:

Users that are interested in genome_coverage_plotter are comparing it to the libraries listed below

• farhangus / Sniffles2_plot
  ☆27Updated 5 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆19Updated 7 months ago
• Nextomics / nextsv
  ☆33Updated 9 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated last month
• jfarek / xatlas
  ☆29Updated 2 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆31Updated last year
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆18Updated 2 months ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆13Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆32Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 6 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated 7 months ago
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆33Updated 6 years ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆31Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆18Updated 2 months ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆31Updated last week
• esrice / hic-pipeline
  A pipeline for scaffolding a genome assembly using Hi-C
  ☆12Updated 2 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 2 years ago
• Popgen48 / scalepopgen
  ☆22Updated 9 months ago
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 6 years ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆22Updated 2 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago