matted-zz / genome_coverage_plotterLinks
Simple script to generate whole-genome coverage plots
☆19Updated 10 years ago
Alternatives and similar repositories for genome_coverage_plotter
Users that are interested in genome_coverage_plotter are comparing it to the libraries listed below
Sorting:
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆49Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- ☆36Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆31Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- ☆31Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- ☆31Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Structural variant merging tool☆55Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- ☆12Updated 7 months ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Scripts to reproduce TrioBinning manuscript☆17Updated 5 years ago
- ☆81Updated 7 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆34Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago