Alternatives and similar repositories for mgkit

Users that are interested in mgkit are comparing it to the libraries listed below

• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• glarue / reciprologs
  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
  ☆13Updated last year
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆30Updated last year
• josephhughes / Sequence-manipulation
  A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats
  ☆30Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated 2 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆63Updated last year
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 11 months ago
• PacificBiosciences / kineticsTools
  Tools for detecting DNA modifications from single molecule, real-time sequencing data
  ☆26Updated 3 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 9 months ago
• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆14Updated 9 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆59Updated last year
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆73Updated 3 years ago
• evolbioinfo / booster
  ☆27Updated 5 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆29Updated 9 months ago
• gear-genomics / dicey
  In-silico PCR, primer design and padlock design for in-situ sequencing
  ☆51Updated 3 months ago
• LKremer / MSA_trimmer
  Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
  ☆17Updated 6 years ago
• ISUgenomics / SequelTools
  new repo
  ☆28Updated 4 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆39Updated last year
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆38Updated 7 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 10 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago