frubino / mgkitLinks
MGKit: Metagenomics Framework
☆16Updated 3 years ago
Alternatives and similar repositories for mgkit
Users that are interested in mgkit are comparing it to the libraries listed below
Sorting:
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- ☆39Updated 2 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆28Updated 3 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Automatically design multiplex PCR primer pairs for diverse templates☆30Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated last year
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Updated 4 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆13Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- ☆29Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 9 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 4 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆31Updated 2 months ago
- new repo☆28Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago