frubino / mgkitLinks
MGKit: Metagenomics Framework
☆17Updated 2 years ago
Alternatives and similar repositories for mgkit
Users that are interested in mgkit are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆53Updated 2 weeks ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆22Updated last month
- Metagenomics microbial abundance quantification☆28Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆19Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 3 weeks ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- ☆32Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- ☆35Updated last year
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆49Updated 6 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated last week
- ☆20Updated 3 years ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆22Updated 2 months ago
- Simple bacterial assembly and annotation pipeline☆75Updated last week
- Scoring GT/AG sites for improving spliced alignment☆45Updated this week
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆30Updated 2 months ago