frubino / mgkit
MGKit: Metagenomics Framework
☆17Updated 2 years ago
Alternatives and similar repositories for mgkit
Users that are interested in mgkit are comparing it to the libraries listed below
Sorting:
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 8 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 9 months ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 11 months ago
- Some useful python scripts for biologists☆32Updated 6 months ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- Digenome-toolkit ver2.☆16Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆66Updated 4 months ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆32Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆37Updated last month
- ☆27Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- ☆31Updated 11 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- Find Unique genomic Regions☆29Updated last month
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 3 months ago
- ☆26Updated 4 years ago
- ☆22Updated 5 years ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- ☆17Updated 5 years ago