signalbash / borf
ORF prediction using python
☆11Updated 3 years ago
Alternatives and similar repositories for borf:
Users that are interested in borf are comparing it to the libraries listed below
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 4 months ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- ☆16Updated 10 months ago
- Segmental duplication detection tool☆13Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- ☆20Updated 2 years ago
- ☆19Updated last year
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Better Alignments with Translated HMMER☆17Updated this week
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆27Updated 2 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Find Unique genomic Regions☆29Updated last month
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- Visualising discordant reads☆15Updated 9 years ago