signalbash / borfLinks
ORF prediction using python
☆11Updated 4 years ago
Alternatives and similar repositories for borf
Users that are interested in borf are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Find Unique genomic Regions☆30Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 3 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 7 years ago
- transposable element typing pipeline☆19Updated last year
- This is code for running Orthofinder -> PAML☆12Updated 9 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 8 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 5 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- CDS prediction in transcripts☆23Updated 5 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆29Updated last year
- Perl scripts for working with the GFF format☆16Updated 14 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- ☆28Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Reference genome quality scores☆21Updated 4 years ago