MODAS: Multi-Omics Data Association Study toolkit
☆21Nov 21, 2024Updated last year
Alternatives and similar repositories for MODAS
Users that are interested in MODAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jul 28, 2025Updated 7 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆21Oct 20, 2025Updated 5 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- ☆11Mar 14, 2026Updated last week
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Sep 13, 2024Updated last year
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆63Jan 31, 2025Updated last year
- ☆14Feb 22, 2022Updated 4 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆18Sep 19, 2022Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆30Oct 31, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Sep 26, 2025Updated 5 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Dec 19, 2023Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- ☆14Jul 27, 2019Updated 6 years ago
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆29Sep 13, 2023Updated 2 years ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆37Oct 29, 2025Updated 4 months ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 5 years ago
- CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.☆21Mar 5, 2023Updated 3 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- ☆17Oct 7, 2024Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 9 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- ☆13Nov 13, 2023Updated 2 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆34Nov 14, 2024Updated last year
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆14Jun 6, 2024Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 6 months ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- ☆21Sep 22, 2022Updated 3 years ago
- A deeplearning driving bioinformatic toolkit.☆25Jul 14, 2025Updated 8 months ago