liusy-jz / MODASLinks
MODAS: Multi-Omics Data Association Study toolkit
☆21Updated 8 months ago
Alternatives and similar repositories for MODAS
Users that are interested in MODAS are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆27Updated 2 years ago
- conserved non-coding sequence☆14Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆23Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated last month
- ☆15Updated last year
- ☆15Updated 5 years ago
- ☆15Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- ☆24Updated 2 years ago
- Scripts for NGS processing☆17Updated 7 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- A long-read SV calling pipeline☆12Updated 3 years ago
- Consensus genome annotation using OMA☆26Updated last month
- ☆42Updated last year
- Scripts to convert between file formats for various analyses☆17Updated 2 months ago
- Identification of conserved non-coding sequences in plants☆21Updated 3 months ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆18Updated 2 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆10Updated 4 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago