tao-bioinfo / readfqLinks
A simple tool to calculate reads number and total base count in FASTQ file
☆21Updated 6 years ago
Alternatives and similar repositories for readfq
Users that are interested in readfq are comparing it to the libraries listed below
Sorting:
- A pipeline for isoseq☆23Updated 6 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆30Updated 9 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆53Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆28Updated last month
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Evolutionary Transcriptomics with R☆43Updated last week
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 3 months ago
- Algorithm to detect germline and de novo transposon insertions☆28Updated last month
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- ☆29Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆26Updated 6 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated this week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.