ORFFinder in Python
☆14Aug 24, 2024Updated 2 years ago
Alternatives and similar repositories for ORFFinder
Users that are interested in ORFFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago
- Fast and flexible ORF finder☆84Jan 17, 2022Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- ☆11Oct 23, 2024Updated last year
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆32Nov 25, 2019Updated 6 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Oct 10, 2021Updated 5 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆13Sep 4, 2026Updated last month
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆16Aug 6, 2026Updated 2 months ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- ☆11Sep 16, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- ☆11Aug 18, 2026Updated last month
- ☆29Aug 6, 2026Updated 2 months ago
- A set of packages to read and write common file formats produced by computational biology software.☆10Jan 21, 2014Updated 12 years ago
- MGnify oriented implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded …☆10Oct 9, 2026Updated last week
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- ☆14Sep 1, 2026Updated last month
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MicrobeRX☆17Aug 11, 2025Updated last year
- ☆11Mar 31, 2025Updated last year
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆15Nov 23, 2024Updated last year
- Extensible quality control dashboard built around FASTQ assessment.☆15May 17, 2019Updated 7 years ago
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆17Mar 3, 2023Updated 3 years ago
- TFFM framework☆13Sep 22, 2025Updated last year
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Feb 12, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Debian packages for Polybar☆13Apr 16, 2020Updated 6 years ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆10Apr 14, 2026Updated 6 months ago
- Quantification of transposable element expression using RNA-seq☆98Feb 8, 2024Updated 2 years ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- simple and not slow ORF caller☆24Apr 7, 2026Updated 6 months ago
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆28Oct 6, 2023Updated 3 years ago
- A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for M…☆11Oct 2, 2026Updated 2 weeks ago