Chokyotager / ORFFinder

Related projects ⓘ

Alternatives and complementary repositories for ORFFinder

• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆30Updated 2 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆62Updated 2 years ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 2 years ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆61Updated 2 weeks ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆51Updated last week
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆52Updated 3 months ago
• steineggerlab / Metabuli
  Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
  ☆118Updated last month
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆74Updated 2 weeks ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆28Updated 3 months ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆46Updated 3 weeks ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆87Updated last month
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆30Updated 8 months ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆42Updated 2 months ago
• glarue / jgi-query
  A simple command-line tool to download data from Joint Genome Institute databases
  ☆49Updated last year
• KatyBrown / CIAlign
  ☆117Updated 2 months ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆23Updated 8 months ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆101Updated this week
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆57Updated last year
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆42Updated last year
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆56Updated 2 weeks ago
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆73Updated this week
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆29Updated 2 years ago
• BackofenLab / CRISPRidentify
  ☆25Updated 2 weeks ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆93Updated 9 months ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆63Updated 4 months ago
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆17Updated 2 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year