MrTomRod / orthofinder-toolsLinks
Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to roary_plots
☆19Updated last year
Alternatives and similar repositories for orthofinder-tools
Users that are interested in orthofinder-tools are comparing it to the libraries listed below
Sorting:
- Multi-genome synteny block visualization tool☆41Updated 4 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆16Updated 4 years ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- Automatic evaluation of HGTs☆29Updated 4 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 8 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- Consensus genome annotation using OMA☆24Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- Diploid genome assembly analysis tools☆14Updated 8 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆19Updated 2 weeks ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 10 months ago
- ContScout sequence contamination filter tool☆20Updated 2 weeks ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 6 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- ASTRAL for PaRalogs and Orthologs☆21Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆22Updated 11 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆35Updated last week
- ☆28Updated last year