This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolkit for finding and visualizing BLAST hits for gene clusters within multiple bacterial genomes.
☆17Jan 16, 2025Updated last year
Alternatives and similar repositories for BackBLAST_Reciprocal_BLAST
Users that are interested in BackBLAST_Reciprocal_BLAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Sep 11, 2023Updated 2 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Coefficient of Variation (CV) and Coefficient of Quartile Variation (CQV) with Confidence Intervals (CI)☆10Sep 1, 2020Updated 5 years ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 3 years ago
- Brings SummarizedExperiment to the tidyverse☆30Mar 17, 2026Updated last week
- ☆15May 31, 2020Updated 5 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- ☆17Jan 14, 2026Updated 2 months ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆15Jun 24, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- ☆12Apr 10, 2021Updated 4 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 3 months ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Create .mzML files through the R Console☆12Aug 27, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆18Sep 19, 2022Updated 3 years ago
- A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/☆18Nov 15, 2012Updated 13 years ago
- A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the…☆17Mar 19, 2023Updated 3 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- Conditional Reciprocal Best Blast☆43Mar 22, 2017Updated 9 years ago
- ☆18Feb 15, 2024Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆14Mar 13, 2018Updated 8 years ago
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆14Jun 6, 2024Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 8 months ago
- Mutual nearest neighbor graphs for population structure inference and visualization☆18Dec 4, 2025Updated 3 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago