DessimozLab / pyhamLinks
☆11Updated last month
Alternatives and similar repositories for pyham
Users that are interested in pyham are comparing it to the libraries listed below
Sorting:
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- ☆17Updated 4 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- convert a blast output to a bed file☆12Updated 10 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 11 months ago
- ☆14Updated 2 years ago
- defusion☆14Updated 4 years ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆14Updated last year
- ☆28Updated 2 years ago
- ☆11Updated 4 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated 3 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- PanGenomePipeline☆16Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 11 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated 4 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆10Updated 6 months ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 3 months ago
- ☆16Updated 2 years ago
- This is the Haplotypo repository☆22Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago