DessimozLab / pyham
☆11Updated last year
Alternatives and similar repositories for pyham:
Users that are interested in pyham are comparing it to the libraries listed below
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆18Updated this week
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- ☆23Updated 5 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 4 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Pipeline for Phylostratigraphy☆13Updated 2 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Population-wide Deletion Calling☆35Updated last week
- This is the Haplotypo repository☆20Updated 11 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 7 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- ☆28Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Implementation of ToL genome assembly workflows☆20Updated last week