Alternatives and similar repositories for pyham

Users that are interested in pyham are comparing it to the libraries listed below

• deweylab / detonate
  DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
  ☆13Updated 9 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 6 months ago
• leapicard / DGINN
  ☆14Updated 3 weeks ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated this week
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• DessimozLab / omamer
  OMAmer - tree-driven and alignment-free protein assignment to sub-families
  ☆18Updated this week
• MartinPippel / DAmar
  Long read QC, assembly and scaffolding pipeline
  ☆13Updated 4 years ago
• nterhoeven / blast2bed
  convert a blast output to a bed file
  ☆12Updated 10 years ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆13Updated 10 months ago
• jdaron / CLARI-TE
  ☆11Updated 10 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• GillesFischerSorbonne / telofinder
  ☆12Updated last year
• yangjl / GERP-diallel
  Research repo for Yang et al., 2017 paper.
  ☆9Updated 5 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆16Updated 2 years ago
• xia-lab / Seq2Fun
  ☆16Updated last year
• AliTVTeam / AliTV-perl-interface
  ☆10Updated 3 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• mjsull / DiscoPlot
  Visualising discordant reads
  ☆15Updated 9 years ago
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆20Updated last year
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆14Updated last week
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated last month
• caballero / RepeatLandscape
  profile the repeat landscape in a genome
  ☆16Updated 10 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated last week
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year