Alternatives and similar repositories for cattleGTEx

Users that are interested in cattleGTEx are comparing it to the libraries listed below

• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• sunyumail93 / PipeRNAseq
  A comprehensive pipeline for RNAseq data analysis
  ☆22Updated 11 months ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 5 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• ma-compbio / Phylo-HMRF
  ☆17Updated 4 years ago
• mortazavilab / cerberus
  ☆19Updated last year
• YinYuan-001 / muntjac_code
  ☆10Updated 3 years ago
• DelinLi / TWAS
  Example for TWAS
  ☆11Updated 3 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• whweve / IntAssoPlot
  ☆18Updated last year
• caulilin / QTG_Seq
  ☆22Updated 6 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• LAILAB-CAU / update-Mo17
  ☆27Updated 2 years ago
• hewm2008 / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆33Updated last month
• kernco / functional-annotation
  Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
  ☆25Updated 3 years ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated 11 months ago
• hanlinqian / IntegrativeNetworkMap
  ☆24Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 4 months ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 7 years ago
• qclian / Pan_Ath
  Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…
  ☆23Updated last year
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 9 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 4 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆38Updated 8 months ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated this week