MatthiasLienhard / isotoolsLinks
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
☆27Updated 2 years ago
Alternatives and similar repositories for isotools
Users that are interested in isotools are comparing it to the libraries listed below
Sorting:
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- ☆38Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Merging paired-end reads and removing adapters☆46Updated last week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆49Updated 2 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- Scoring GT/AG sites for improving spliced alignment☆46Updated 3 weeks ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Splits fastq files evenly☆22Updated 5 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- ☆34Updated 2 years ago
- ☆35Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last week
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago