IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
☆27Oct 6, 2023Updated 2 years ago
Alternatives and similar repositories for isotools
Users that are interested in isotools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆220Apr 28, 2026Updated last week
- ☆18May 31, 2024Updated last year
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆158Jan 25, 2024Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python library to visualize and analyze long-read transcriptomes☆68Jan 19, 2026Updated 3 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Mar 21, 2026Updated last month
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆35Nov 8, 2023Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 5 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆238Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆44Mar 9, 2023Updated 3 years ago
- Fast and flexible ORF finder☆81Jan 17, 2022Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆90Mar 23, 2026Updated last month
- ☆10Mar 11, 2025Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆263Updated this week
- TD2☆38Jan 14, 2026Updated 3 months ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- ☆21Apr 20, 2026Updated 2 weeks ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆25Mar 9, 2026Updated last month
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- ☆14Dec 22, 2025Updated 4 months ago
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆16Feb 1, 2021Updated 5 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 3 months ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Visualizing transcript structure and annotation using ggplot2☆167Aug 24, 2024Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated 2 years ago
- ☆20Oct 5, 2022Updated 3 years ago