IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
☆28Oct 6, 2023Updated 3 years ago
Alternatives and similar repositories for isotools
Users that are interested in isotools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago
- A universal toolkit for upstream processing of long RNA reads☆245Oct 27, 2026Updated last week
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Isoform Identification and Quantification via Long Read RNA-Seq☆17Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆39Apr 25, 2023Updated 3 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago
- ☆21May 31, 2024Updated 2 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆97Aug 2, 2026Updated 3 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆260Oct 2, 2026Updated last month
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆17Oct 9, 2026Updated 3 weeks ago
- ☆21Apr 20, 2026Updated 6 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆57Oct 26, 2026Updated last week
- ☆15Aug 22, 2023Updated 3 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated 5 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆17Apr 4, 2024Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆15Oct 5, 2026Updated 3 weeks ago
- ☆20Nov 17, 2025Updated 11 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆283Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆45Mar 9, 2023Updated 3 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆46Oct 13, 2026Updated 3 weeks ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 7 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated 3 months ago
- Scoring GT/AG sites for improving spliced alignment☆60Nov 10, 2025Updated 11 months ago
- ☆31Nov 28, 2024Updated last year
- Minotour API, web and client code☆30Mar 28, 2026Updated 7 months ago
- A GTF-native ORF annotation tool for transcriptomes☆15Jun 11, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Nov 29, 2022Updated 3 years ago
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated 4 months ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆23Apr 29, 2024Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆166Sep 14, 2026Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆137Updated this week