bioinform / metasv
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
☆55Updated 7 years ago
Alternatives and similar repositories for metasv:
Users that are interested in metasv are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆51Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆39Updated 11 months ago
- An awk-like VCF parser☆56Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Tools for the analysis of structural variation in genomes☆78Updated last year
- CNV screening and annotation tool☆24Updated 8 years ago
- small RNA analysis from NGS data☆37Updated 7 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last month
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆39Updated 7 months ago
- Structural Variant Index☆72Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated this week
- for visual evaluation of read support for structural variation☆52Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- ☆78Updated 11 years ago