bioinform / metasv
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
☆55Updated 7 years ago
Alternatives and similar repositories for metasv:
Users that are interested in metasv are comparing it to the libraries listed below
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- ☆51Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Assembly Based ReAligner☆73Updated 6 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- ☆39Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- Structural variant caller☆54Updated 3 years ago
- mtDNA Variant Caller☆34Updated 4 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆79Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- UCSC Nanopore☆43Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Structural Variant Index☆72Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated 11 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago