bioinform / metasvLinks
MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
☆59Updated 8 years ago
Alternatives and similar repositories for metasv
Users that are interested in metasv are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ☆51Updated 6 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Structural variant caller☆55Updated 3 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- TIDDIT - structural variant calling☆77Updated 7 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variant Index☆75Updated 11 months ago
- A collection of command line tools for working with sequencing data☆52Updated 2 weeks ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Specifications for PacBio® native file formats☆31Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year