MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
☆59Jun 30, 2017Updated 9 years ago
Alternatives and similar repositories for metasv
Users that are interested in metasv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆344Feb 22, 2026Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- ☆38Apr 13, 2024Updated 2 years ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- Toolset for SV simulation, comparison and filtering☆424Dec 1, 2023Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆527Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 11 months ago
- Structural variation and indel detection by local assembly☆256Jul 15, 2026Updated 2 weeks ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 7 years ago
- A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis☆23Feb 4, 2025Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 5 months ago
- reference-guided aligner for next-generation sequencing technologies☆57Sep 20, 2016Updated 9 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆178Jan 7, 2020Updated 6 years ago
- Assembly Based ReAligner☆75May 24, 2018Updated 8 years ago
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated last week
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- classification of higher-order structural variants from breakpoint data☆11Jan 8, 2018Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago