Computational-conSequences / SequenceToolsLinks
Programs used in the lab for various tasks
☆13Updated 2 years ago
Alternatives and similar repositories for SequenceTools
Users that are interested in SequenceTools are comparing it to the libraries listed below
Sorting:
- collection of bioinformatic scripts☆31Updated last year
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆13Updated last year
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆22Updated 3 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 6 months ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆27Updated 3 years ago
- NLR annotation tool☆28Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago
- Some bioinformic domestic scripts.☆35Updated 2 years ago
- Workflow for Building Microsynteny Networks☆55Updated 2 years ago
- A Tool for Ultra-low Coverage HiFi Data Assembly☆24Updated last month
- Tiberius is a deep learning gene finder.☆65Updated this week
- BITACORA: A Bioinformatics tool for gene family annotation☆45Updated 3 weeks ago
- Computational Analysis of Gene Expression Evolution☆42Updated last week
- This is the standalone version of the EviAnn pipeline☆97Updated 2 weeks ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- A program for detection of tRNA genes☆61Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆14Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆13Updated 2 years ago
- Associated code for EvoWeaver publication☆15Updated last month
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆14Updated 2 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆44Updated last year
- new repo☆28Updated 4 years ago
- Neural network classification of TE☆89Updated 3 weeks ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆26Updated last week
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Updated 3 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆16Updated last year