Alternatives and similar repositories for SequenceTools

Users that are interested in SequenceTools are comparing it to the libraries listed below

• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆56Updated 3 years ago
• plantismash / plantismash
  Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
  ☆27Updated 2 weeks ago
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆61Updated 2 years ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆32Updated last year
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆22Updated 3 years ago
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated 3 months ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆36Updated 6 years ago
• Stephane-S / Simplot_PlusPlus
  ☆38Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆73Updated 3 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆52Updated 9 months ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆15Updated last year
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆67Updated 2 years ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 9 months ago
• KatyBrown / CIAlign
  ☆131Updated last year
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated 4 months ago
• glarue / reciprologs
  Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.
  ☆13Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆61Updated 3 months ago
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆35Updated 2 years ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆70Updated 2 weeks ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆79Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆151Updated 3 weeks ago
• sing-group / ALTER
  ALignment Transformation EnviRonment
  ☆11Updated 7 years ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆101Updated last year
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated last month
• PengNi / deepsignal-plant
  Detecting methylation using signal-level features from Nanopore sequencing reads of plants
  ☆61Updated last year
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆62Updated 2 weeks ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆48Updated last year
• pbfrandsen / insect_genome_assemblies
  scripts used to download and analyze insect assemblies from GenBank
  ☆15Updated 4 years ago