Alternatives and similar repositories for SequenceTools

Users that are interested in SequenceTools are comparing it to the libraries listed below

• aziele / pfam_scan
  A tool for scanning FASTA protein sequences against a library of Pfam HMMs
  ☆23Updated 3 years ago
• peterthorpe5 / public_scripts
  collection of bioinformatic scripts
  ☆31Updated last year
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆59Updated 3 years ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆35Updated last year
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆81Updated 3 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆86Updated 3 weeks ago
• liusihang / ViOTUcluster
  ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow
  ☆19Updated this week
• JanaSperschneider / EffectorP-3.0
  Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
  ☆25Updated 3 years ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆37Updated 6 years ago
• sagnikbanerjee15 / Finder
  A fully automated gene annotator from RNA-Seq expression data
  ☆61Updated 2 years ago
• plantismash / plantismash
  Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
  ☆34Updated 2 months ago
• TongZhou2017 / modtector
  A high-performance modification detection tool in Rust
  ☆62Updated 3 months ago
• BioinformaticsLabAtMUN / Promotech
  Machine-learning-based general bacterial promoter prediction tool.
  ☆53Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆70Updated 3 weeks ago
• Hua-CM / HuaSmallTools
  Some bioinformic domestic scripts.
  ☆35Updated 3 years ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆121Updated last month
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆16Updated 8 months ago
• OrthoFinder / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆89Updated this week
• FlyPythons / KEGGTools
  A collection of tools to download and process KEGG database
  ☆40Updated 7 years ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆106Updated last year
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated last month
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆36Updated 3 years ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆67Updated 2 years ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆61Updated last year
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆38Updated 7 years ago
• Ensembl / plant-scripts
  Scripting analyses of genomes in Ensembl Plants
  ☆41Updated 2 weeks ago
• biomendi / TRANSCRIPTOME-ASSEMBLY-PIPELINE
  A practical guide to build de-novo transcriptome assemblies for non-model organisms (described in Montero-Mendieta et al. 2017).
  ☆28Updated 8 years ago
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆11Updated 7 years ago
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆54Updated last year