zjshi / MaastLinks
Microbial agile accurate SNP Typer
☆29Updated last year
Alternatives and similar repositories for Maast
Users that are interested in Maast are comparing it to the libraries listed below
Sorting:
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Bacterial GWAS analysis☆45Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Recombination-free trees☆60Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 6 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 7 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 5 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- strain-level analysis tools☆39Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Genome size estimation from long read overlaps☆62Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Plasmid analysis using rearrangement distances☆46Updated last month