zjshi / MaastLinks
Microbial agile accurate SNP Typer
☆30Updated 2 years ago
Alternatives and similar repositories for Maast
Users that are interested in Maast are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- Fast and space-efficient taxonomic classification of long reads☆42Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- Recombination-free trees☆63Updated 4 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 7 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 5 months ago
- Plasmid analysis using rearrangement distances☆49Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- viralFlye pipeline☆18Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Updated 5 months ago
- strain-level analysis tools☆39Updated last year
- Population analysis PIPEline 🛠🧬☆22Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 6 months ago
- ☆24Updated 11 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Colinear block visualisation tool☆31Updated last year
- Calculate assocations between genes and traits☆29Updated 9 months ago