zjshi / MaastLinks
Microbial agile accurate SNP Typer
☆29Updated last year
Alternatives and similar repositories for Maast
Users that are interested in Maast are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Bacterial GWAS analysis☆40Updated last week
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- ☆21Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 weeks ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 weeks ago
- Genome size estimation from long read overlaps☆56Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆35Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Strain Resolution ON Graphs☆47Updated last year
- ☆16Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- viralFlye pipeline☆18Updated 9 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- ☆15Updated 2 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 2 months ago