zjshi / MaastLinks
Microbial agile accurate SNP Typer
☆30Updated 2 years ago
Alternatives and similar repositories for Maast
Users that are interested in Maast are comparing it to the libraries listed below
Sorting:
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 9 months ago
- ☆25Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last week
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Recombination-free trees☆63Updated 4 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆33Updated 6 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆44Updated 9 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 7 months ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Updated 8 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 5 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 2 years ago
- Population analysis PIPEline 🛠🧬☆22Updated 3 weeks ago
- strain-level analysis tools☆39Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago