Highly customizable, ambiguity-aware dotplots for visual sequence analyses
☆110Feb 12, 2026Updated 3 weeks ago
Alternatives and similar repositories for flexidot
Users that are interested in flexidot are comparing it to the libraries listed below
Sorting:
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 2 years ago
- displays multiple genomic sequences in the form of a tube map☆216Nov 12, 2025Updated 3 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Jun 17, 2024Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- An extensible python-based genomics visualization engine☆144Aug 11, 2023Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- A tool for Racon polishing of miniasm assemblies☆79Updated this week
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆113Feb 20, 2026Updated 2 weeks ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Simple visualisation tool for sequences' similarity in bioinformatics☆13Apr 12, 2018Updated 7 years ago
- Plot structural variant signals from many BAMs and CRAMs☆560Jul 13, 2024Updated last year
- Create a tree using Mash distances☆184Oct 24, 2023Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 9 months ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Updated this week
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 10 months ago
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆224Nov 25, 2022Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆128Dec 8, 2025Updated 2 months ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 10 months ago
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Feb 9, 2026Updated 3 weeks ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- A list of software for pangenomics☆176Feb 18, 2026Updated 2 weeks ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Genome size estimation from long read overlaps☆81Updated this week
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago