flexidot-bio / flexidotLinks
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
β92Updated 3 months ago
Alternatives and similar repositories for flexidot
Users that are interested in flexidot are comparing it to the libraries listed below
Sorting:
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β76Updated 9 years ago
- πGenome assembly scaffolder using minimizer graphsβ84Updated 11 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ60Updated last year
- A fork of exonerate: a generic tool for sequence alignmentβ70Updated last year
- a long-read error correction tool using the multi-string Burrows Wheeler Transformβ45Updated 5 years ago
- β35Updated 2 years ago
- A post sequencing QC tool for Oxford Nanopore sequencersβ102Updated last month
- PacBio hybrid error correction through iterative short read consensusβ60Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.β68Updated 7 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etβ¦β93Updated 4 months ago
- Error correction for Illumina RNA-seq readsβ67Updated last year
- Visualize whole genome alignments as linear mapsβ73Updated last month
- k-mer learning materialsβ74Updated 7 months ago
- Assembly statistic visualisationβ90Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore readsβ68Updated 3 years ago
- β66Updated 2 weeks ago
- Dotplot large Genomes in an Interactive, Efficient and Simple wayβ108Updated last week
- Same species annotation lift over pipeline.β98Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Royeβ¦β58Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.β54Updated 10 months ago
- Interactive visualization of assembly graphsβ83Updated 3 years ago
- Python programs for processing GFF3 filesβ99Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the originalβ51Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.β85Updated 9 months ago
- Python3 scripts to manipulate FASTA and FASTQ filesβ71Updated 5 months ago
- PHASTβ75Updated this week
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.β67Updated 2 years ago
- Dual barcode and primer demultiplexing for MinION sequenced readsβ41Updated 2 years ago
- Synteny Imagerβ64Updated last month
- Quickly calculate and visualize sequence coverage in alignment filesβ99Updated 6 years ago