flexidot-bio / flexidotLinks
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
☆94Updated last month
Alternatives and similar repositories for flexidot
Users that are interested in flexidot are comparing it to the libraries listed below
Sorting:
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆110Updated last week
- Interactive visualization of assembly graphs☆83Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆105Updated last week
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆87Updated last year
- A fork of exonerate: a generic tool for sequence alignment☆70Updated 2 years ago
- ☆35Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Python3 scripts to manipulate FASTA and FASTQ files☆72Updated 9 months ago
- Assembly statistic visualisation☆92Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆86Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Synteny Imager☆65Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- k-mer learning materials☆81Updated 10 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 7 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Interactive quality assessment of genome assemblies☆116Updated last week
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Plotting tools for nanopore methylation data☆95Updated 4 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago