Highly customizable, ambiguity-aware dotplots for visual sequence analyses
☆116Feb 12, 2026Updated 2 months ago
Alternatives and similar repositories for flexidot
Users that are interested in flexidot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- displays multiple genomic sequences in the form of a tube map☆223Nov 12, 2025Updated 5 months ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆22Jun 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆113Apr 1, 2026Updated 2 weeks ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 6 years ago
- Plot structural variant signals from many BAMs and CRAMs☆564Jul 13, 2024Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 10 months ago
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Apr 8, 2026Updated last week
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Long read QC, assembly and scaffolding pipeline☆13Jul 13, 2020Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆160Updated this week
- Create a tree using Mash distances☆187Oct 24, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ANI based satellite annotation☆26Mar 2, 2026Updated last month
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- ☆119Oct 10, 2025Updated 6 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- An extensible python-based genomics visualization engine☆144Aug 11, 2023Updated 2 years ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆899Apr 2, 2026Updated 2 weeks ago
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- expressions on VCFs☆91Mar 17, 2026Updated 3 weeks ago
- ☆78Jun 12, 2020Updated 5 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated 2 months ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- A grammar of graphics for comparative genomics☆754Feb 23, 2026Updated last month
- Yet another Hi-C scaffolding tool