thackl / minidotLinks
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
☆74Updated 8 years ago
Alternatives and similar repositories for minidot
Users that are interested in minidot are comparing it to the libraries listed below
Sorting:
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- Visualize whole genome alignments as linear maps☆72Updated 8 months ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 6 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Merge transcriptome assemblies☆31Updated 8 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- finshingTool☆55Updated 8 years ago
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆62Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 5 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Synteny Imager☆62Updated 9 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago