thackl / minidotLinks
Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
☆76Updated 8 years ago
Alternatives and similar repositories for minidot
Users that are interested in minidot are comparing it to the libraries listed below
Sorting:
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- Synteny Imager☆64Updated last month
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- k-mer learning materials☆73Updated 6 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆84Updated 9 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆67Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated last month
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated 10 months ago
- Rank-based Gene Ontology analysis of gene expression data☆42Updated 2 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago