paoloshasta / shasta
De novo assembly from Oxford Nanopore reads.
☆74Updated last week
Related projects ⓘ
Alternatives and complementary repositories for shasta
- Pipeline to convert a haploid assembly into diploid☆92Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Foreign Contamination Screening caller scripts and documentation☆106Updated this week
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- ☆121Updated last month
- ☆151Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated 2 years ago
- Long-read mock community experiments☆103Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆52Updated last year
- Reference-free profiling of polyploid genomes☆105Updated 4 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- Research release basecalling models and configurations☆103Updated 5 months ago
- ☆34Updated last week
- ☆72Updated last month
- Pangenome-based genome inference☆114Updated this week
- Collection of tools for the analysis of CpG data☆74Updated 8 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆65Updated 8 months ago
- ☆60Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Nanopore data assembler☆135Updated 2 years ago
- High-precision TE Annotator☆65Updated last week
- Yet another Hi-C scaffolding tool☆131Updated 2 weeks ago
- Neural network classification of TE☆86Updated 2 years ago
- Constructing a pangenome gene graph☆174Updated 4 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆85Updated 3 weeks ago
- ☆76Updated 4 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆64Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆93Updated 10 months ago
- Synteny Imager☆60Updated 2 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago