paoloshasta / shastaLinks
De novo assembly from Oxford Nanopore reads.
☆86Updated 3 months ago
Alternatives and similar repositories for shasta
Users that are interested in shasta are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆103Updated 7 months ago
- ☆138Updated 4 months ago
- Structural Variant Identification Method using Genome Assemblies☆123Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆152Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- ☆117Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆113Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆144Updated 2 weeks ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 9 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆92Updated last year
- Collection of tools for the analysis of CpG data☆94Updated 2 months ago
- Reference-free profiling of polyploid genomes☆125Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 4 months ago
- Pangenome-based genome inference☆146Updated last month
- Long-read mock community experiments☆105Updated 3 years ago
- Yet another Hi-C scaffolding tool☆161Updated 10 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆81Updated 4 months ago
- Phased assembly variant caller☆126Updated 9 months ago
- Foreign Contamination Screening caller scripts and documentation☆138Updated 6 months ago
- ☆161Updated 3 weeks ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Evaluating genome assemblies☆105Updated last week
- Nanopore data assembler☆161Updated 3 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated 2 weeks ago
- Yet another k-mer analyzer☆143Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆124Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- A program to call variants from genome alignment☆81Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆200Updated this week