Alternatives and similar repositories for shasta:

Users that are interested in shasta are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆95Updated last week
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆76Updated this week
• marbl / ModDotPlot
  ☆126Updated 3 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆84Updated 6 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated 2 weeks ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated 2 weeks ago
• yukiteruono / pbsim3
  PBSIM3: a simulator for all types of PacBio and ONT long reads
  ☆69Updated 10 months ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆73Updated 2 months ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆140Updated 2 years ago
• epi2me-labs / wf-basecalling
  ☆36Updated last month
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆91Updated this week
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 2 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 6 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆96Updated 3 weeks ago
• kjenike / panagram
  ☆61Updated 3 weeks ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆103Updated 3 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆99Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆122Updated last month
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆142Updated 2 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆107Updated last month
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 6 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆112Updated this week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆103Updated 4 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• SorenKarst / longread_umi
  ☆76Updated 4 years ago