De novo assembly from Oxford Nanopore reads.
☆89Feb 16, 2026Updated 4 months ago
Alternatives and similar repositories for shasta
Users that are interested in shasta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆397Apr 22, 2026Updated last month
- SV calling for diploid assemblies☆31Mar 22, 2024Updated 2 years ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated last year
- ☆121Updated this week
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆255Jun 5, 2026Updated 2 weeks ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Linear-time de novo Long Read Assembler☆41Mar 19, 2026Updated 2 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆165Jun 5, 2026Updated 2 weeks ago
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆52May 2, 2026Updated last month
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10May 2, 2026Updated last month
- Graph-based assembly phasing☆96Nov 25, 2025Updated 6 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- Long read / genome alignment software☆322Dec 16, 2025Updated 6 months ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- ☆37Feb 22, 2023Updated 3 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 weeks ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Close assembly gaps using long-reads at high accuracy.☆51Feb 20, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆168Jun 3, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- Make colorful identity heatmaps of genomic sequence☆138May 24, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆46Aug 20, 2025Updated 9 months ago
- ☆50Nov 24, 2025Updated 6 months ago