paoloshasta / shastaLinks
De novo assembly from Oxford Nanopore reads.
☆86Updated 5 months ago
Alternatives and similar repositories for shasta
Users that are interested in shasta are comparing it to the libraries listed below
Sorting:
- Pipeline to convert a haploid assembly into diploid☆105Updated 9 months ago
- ☆142Updated 5 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆113Updated last week
- Structural Variant Identification Method using Genome Assemblies☆125Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- Collection of tools for the analysis of CpG data☆96Updated 3 months ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- Long-read mock community experiments☆105Updated 4 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆102Updated last month
- This is the standalone version of the EviAnn pipeline☆127Updated last week
- Phased assembly variant caller☆127Updated 10 months ago
- ☆168Updated 2 weeks ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 4 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- ☆117Updated 3 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Yet another Hi-C scaffolding tool☆163Updated 11 months ago
- Pangenome-based genome inference☆149Updated 3 months ago
- Nanopore data assembler☆161Updated 3 years ago
- A list of software for pangenomics☆134Updated last week
- A tool for Racon polishing of miniasm assemblies☆78Updated last month
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆95Updated last year
- High-precision TE Annotator☆136Updated this week
- Evaluating genome assemblies☆108Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆111Updated last month
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated last month