gear-genomics / diceyLinks
In-silico PCR, primer design and padlock design for in-situ sequencing
☆53Updated 4 months ago
Alternatives and similar repositories for dicey
Users that are interested in dicey are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆84Updated last month
- python plotly Circos from VCF☆40Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A battery of methylation tools for PacBio HiFi reads☆46Updated 3 weeks ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆83Updated 9 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 10 months ago
- A local-haplotagging-based small and structural variant caller☆90Updated 2 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 11 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- ☆29Updated 4 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated last month
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 9 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Structural variant caller☆55Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated 3 weeks ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year