In-silico PCR, primer design and padlock design for in-situ sequencing
☆54Apr 7, 2026Updated 3 months ago
Alternatives and similar repositories for dicey
Users that are interested in dicey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆51Apr 2, 2025Updated last year
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2026Updated last month
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆126Jul 10, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆47May 21, 2017Updated 9 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆121Jun 20, 2024Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆37May 23, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆480Jul 1, 2026Updated 3 weeks ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tool for decomposition centromeric assemblies and long reads into monomers☆38Sep 17, 2022Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 5 months ago
- R package for binmap☆12Aug 3, 2023Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 9 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Scoring GT/AG sites for improving spliced alignment☆58Nov 10, 2025Updated 8 months ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- ☆20Dec 13, 2023Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆167Nov 4, 2025Updated 8 months ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆146Jan 19, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- Primer3Plus is an advanced web interface for primer3.☆47Apr 26, 2025Updated last year
- Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files☆122Updated this week
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago