gear-genomics / dicey
In-silico PCR, primer design and padlock design for in-situ sequencing
☆51Updated 6 months ago
Alternatives and similar repositories for dicey
Users that are interested in dicey are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last month
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- Simple pileup-based variant caller☆89Updated 3 weeks ago
- python plotly Circos from VCF☆35Updated 10 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆32Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated this week
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Scripting analyses of genomes in Ensembl Plants☆39Updated this week
- A program for assessing the T2T genome continuity☆73Updated last month
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆61Updated 2 months ago
- ☆43Updated 8 years ago
- Filter SAM file for soft and hard clipped alignments☆48Updated 11 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- ☆35Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago