Alternatives and similar repositories for primerDesign

Users that are interested in primerDesign are comparing it to the libraries listed below

• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 4 months ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆76Updated last month
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 3 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• molgenis / NIPTeR
  R Package for Non Invasive Prenatal Testing (NIPT) analysis
  ☆44Updated 6 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆51Updated 3 months ago
• quwubin / MFEprimer-2.0
  MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity
  ☆41Updated 4 years ago
• bcgsc / HLAminer
  ⛏ HLA predictions from NGS shotgun data
  ☆55Updated 7 months ago
• Genotek / ClassifyCNV
  ClassifyCNV: a tool for clinical annotation of copy-number variants
  ☆69Updated 2 years ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆80Updated 3 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated last month
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆67Updated 8 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆57Updated 3 weeks ago
• molgenis / capice
  ☆27Updated last year
• Sentieon / sentieon-scripts
  Helper scripts for biological data processing from Sentieon
  ☆64Updated 2 months ago
• lpryszcz / bin
  My bioinfo toolbox
  ☆50Updated 11 months ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated 2 weeks ago
• mehrdadbakhtiari / adVNTR
  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
  ☆47Updated last year
• aakechin / NGS-PrimerPlex
  NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
  ☆67Updated 7 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆81Updated 10 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated this week
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated 3 weeks ago
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
  ☆34Updated last month
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆59Updated 8 years ago
• drmaize / ThermoAlign
  ThermoAlign: software for automated primer design
  ☆27Updated 7 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆51Updated 5 years ago