A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
☆47May 21, 2017Updated 8 years ago
Alternatives and similar repositories for primerDesign
Users that are interested in primerDesign are comparing it to the libraries listed below
Sorting:
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆69May 26, 2025Updated 9 months ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- Multiplex Primer Design☆22Oct 30, 2020Updated 5 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆81Dec 5, 2022Updated 3 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Apr 28, 2021Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆15Aug 20, 2021Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Jan 12, 2026Updated last month
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated last month
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- DegenPrimer is a tool to check the quality of degenerate primers by simulating PCR☆17May 12, 2022Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Collection of fragmentomic analysis scripts☆12Jul 3, 2024Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆100Feb 27, 2023Updated 3 years ago
- ☆21Sep 22, 2022Updated 3 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago