zichner / primerDesign
A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
☆45Updated 7 years ago
Alternatives and similar repositories for primerDesign:
Users that are interested in primerDesign are comparing it to the libraries listed below
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆60Updated last year
- ☆46Updated 2 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 2 years ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Variant calling tool for long-read sequencing data☆102Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ThermoAlign: software for automated primer design☆25Updated 6 years ago
- ☆39Updated 8 months ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated 10 months ago
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆39Updated 3 years ago
- perSVade: personalized Structural Variation detection☆38Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆55Updated last year
- small RNA analysis from NGS data☆37Updated 4 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆77Updated 2 years ago
- Error correction for Illumina RNA-seq reads☆64Updated 10 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 8 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated 11 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 10 months ago
- Splicing Prediction Pipeline☆13Updated last year
- ☆26Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago