mikolmogorov / pbclipLinks
A simple tool to fix PacBio fasta/q that was not properly split into subreads
☆16Updated 4 years ago
Alternatives and similar repositories for pbclip
Users that are interested in pbclip are comparing it to the libraries listed below
Sorting:
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- transposable element typing pipeline☆19Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- ☆14Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- ☆29Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- ☆16Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 5 months ago
- ☆16Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- ☆33Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆33Updated 3 years ago