cdarby / samovarLinks
Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
☆23Updated 6 years ago
Alternatives and similar repositories for samovar
Users that are interested in samovar are comparing it to the libraries listed below
Sorting:
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆29Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- ☆23Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 8 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago