cdarby / samovar
Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
☆24Updated 5 years ago
Alternatives and similar repositories for samovar:
Users that are interested in samovar are comparing it to the libraries listed below
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆35Updated 2 weeks ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- sort genomic data☆35Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated last month
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆14Updated 7 years ago
- ☆16Updated 2 months ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 6 months ago
- ☆23Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year