NCBI-Codeathons / SWIGGLinks
A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
☆22Updated 5 years ago
Alternatives and similar repositories for SWIGG
Users that are interested in SWIGG are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- ☆9Updated 3 years ago
- k-mer similarity analysis pipeline☆22Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- ☆11Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆13Updated 3 years ago
- ☆14Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 10 months ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 8 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago