NCBI-Codeathons / SWIGG
A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
☆20Updated 5 years ago
Alternatives and similar repositories for SWIGG:
Users that are interested in SWIGG are comparing it to the libraries listed below
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆14Updated last year
- ☆13Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Add functional variant annotation to MAF file☆11Updated 2 months ago
- Pan gGnome Viewer☆10Updated 11 months ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- reference free variant assembly☆32Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆35Updated 3 months ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 months ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- ☆16Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago
- k-mer similarity analysis pipeline☆20Updated this week
- Annotating principal splice isoforms☆14Updated 3 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Variant call adjudication☆16Updated 7 months ago
- run-length BWT tools for genomic sequences☆18Updated 2 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆21Updated 3 years ago
- ☆11Updated last year