AGIScuipeng / PMPrimerLinks
Automatically design multiplex PCR primer pairs for diverse templates
☆30Updated last year
Alternatives and similar repositories for PMPrimer
Users that are interested in PMPrimer are comparing it to the libraries listed below
Sorting:
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 7 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- ☆38Updated last year
- new repo☆28Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- ☆29Updated 4 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 4 months ago
- ☆29Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Multiplex PCR design, in silico☆18Updated 9 months ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Updated 4 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆26Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Updated 4 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆21Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year