A fork of the project Excavator2 from sourceforge.
☆10Jun 29, 2017Updated 9 years ago
Alternatives and similar repositories for Excavator2
Users that are interested in Excavator2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts snpeff annotations into MAF☆11Aug 23, 2024Updated 2 years ago
- CNV detection tool for WES data☆13Aug 21, 2024Updated 2 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 8 years ago
- Functional-trained variant effect predictor☆19Aug 27, 2026Updated 2 months ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 3 years ago
- KEA stream compiler☆10Jan 30, 2024Updated 2 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆18Jul 21, 2026Updated 3 months ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆19Sep 30, 2026Updated last month
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated 4 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fast and memory-efficient method for haplotype assembly from long gapless reads.☆10Jun 11, 2018Updated 8 years ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- ☆10Mar 5, 2019Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆18Mar 10, 2018Updated 8 years ago
- Phenotype driven gene prioritization for HPO☆53Jul 26, 2021Updated 5 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice☆10Jun 5, 2023Updated 3 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- 3ASC: variant prioritization tool leveraging multiple instance learning for rare Mendelian disease genomic testing☆11Nov 11, 2024Updated last year
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- Celery worker for R tasks! Celery R☆30May 6, 2021Updated 5 years ago
- Explaining the genetic causality for complex diseases by deep association kernel learning☆15May 7, 2021Updated 5 years ago
- ☆25Oct 22, 2026Updated last week
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 6 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Parser and I/O operations for VCF files☆10Jul 29, 2025Updated last year
- RUFUS k-mer based genomic variant detection☆56Jan 5, 2026Updated 9 months ago
- program for haplotype phasing from sequence reads and related tools☆25Nov 29, 2018Updated 7 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆26Oct 30, 2025Updated last year
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 11 years ago
- For original Nature Biotechnology Publication (Q1 2012)☆27Jul 9, 2017Updated 9 years ago
- ☆13Jan 23, 2020Updated 6 years ago