matheuscburger / Excavator2Links
A fork of the project Excavator2 from sourceforge.
☆10Updated 8 years ago
Alternatives and similar repositories for Excavator2
Users that are interested in Excavator2 are comparing it to the libraries listed below
Sorting:
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A Mendelian approach to variant effect prediction built in keras☆19Updated 2 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Updated 2 months ago
- NiPTUNE. A Python library for NIPT analyses.☆12Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- TREDPARSE: HLI Short Tandem Repeat (STR) caller☆25Updated 5 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Computes various SV statistics☆14Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Updated 6 months ago
- Structural Variation breakpoint discovery via adaptive learning